Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1238 ATGCGATCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCTGAGGCTGCATCAGTCTTGAAGCACTCTCTGGGGTTGGCTCGTAAGAGGGGCCATGCACAGGTCACACCTCTGCACGTGGCTGCAACTTTGCTAAGCCTAAGAGCTAGTTCCTTCACAAGGGGTTGTCTCAAATCTCAGCATCACCAAACTTCACATCCTCTTCAATGCAGAGCCCTTGAGCTTTGTTTCAATGTGGCCATCAACAGGGTTCCAACAAGACCAGCTCCTTTCATCCACAATTCTCATCAGCCTTCTCTTTCCAATGCTCTCATTGCTGCACTCAAAAGAGCACAGGCTCACCAGAGAAGGGGTTCCATTGAGCAACAGCAACAGCAGCCACTTCTCACTGCCAGGGTTGAGCTTGAACAACTCATCATATCCATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGATTCTCTAGCACTGCTGTTAAGAACAATATAGAGGACTCTTCTTCACTACCTTCTTCGGTTTTTCAGTGTTACAACACTTCTGGTGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCTAGTGAGAGCAACACTCTCAGTTTCAGGAAGAACTATTTCTTGGATGCTTACGGTTCTGAGTTCAACAACCAGATTCTCTTTTCACCAACAAATAAAGAACCGGTGTATCCTTTTCCTATTACTGGTGCAACAGCATCTTTTAATAAGGATGATATCAAGGTGGTTCTTGATACCCTTTTGAGGAAGAAGAAGAAAAAGAACACTGTGATAGTTGGTGACTCAGTGTCATTTACTGAAGGCCTTGTGAGAGAGGTAATGAGAATGTTTGAAAGATCAGAGGTGCCTGATGAGTTGAAATCAACAAATTTTATCAAATTTCAGTTAGCACCAGTTTCTTTGAGGTATATGAAAAGAGATGAGGTTGAAATGAAAGTCTTGGAGCTTAAAAGGAAAGTGGACTCAGTTGCATTAAGAGGAGGAAGGGGTTGCATTTTTTATATTGGAGACATAAAATGGATAATGGAGGGATCTTTTAGTAAGAAAAAGGAAGGGTCCCTAGATGTTGAATTTTCTGGTTATAATCCAGTAGAGCATTTAGTTTCAGAAATTGGAAAGTTATTCTGTGATTGTGGAACCTCAAACACTAAGGTATGGCTTATGGCCACTGCAAGTTATCAAACATACATGAAGTGTCAAATGAAACAATCCCCTCTGGAATCTCTGTGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGCCTTGAGCCTCCATGCTTCCTGTGGAGTATGTGCGGTCTCTGGGCTATGCCAGAACCTGTTGTCAAAACTCAAAAGCATGGTTGGTTGTGTCCTTGATTCAAAGATGACCGTCTCCCAGAACCAATCTCAAATGCTGGAAACAAAACTCCTTAATAAGGAGCAGCAGGATAAGCTAAATTGTTGTGAAGAATGTACCTATTACAATAAGGAAGCTCAATTTCTCGAAAAAGACCAGAAGAAAATGCTGCCTTTCTGGCTTCAGTCTCATAACACGGAAACCAATCAGAAGGATGAACTAATCAAGTTCAGAACAAAATGGAATAGATTGTGCCACTGTCACCACCAAAGCCAACAGTATCATAACAAATCCAACAAAAATTACAATTGGAATGCAAAGATCTACCCCTATAACTCATCAAGTTCTATATCCTTTGCCAACAATACTAATAGCTCCAATCTCGTACCTTGTTTCCAGCCTCAACAATCATGCATTGAGTACAATTTCAGCGATACAAAGCAAGAAACAGATCCAGTCGTGGATTCTCTTGGAGGCACGGAAGAAGGTAACGAAGTAAAGACTACTCTTGCTCTTGGAAACGGTGGTGGTTCAGGTGAGCCGGTGGGGGATATTACTGATAGAACACTCCAACGAGCTCATATTTGTAAACTATTGCAGGAGAATATAGCATGGCATTCTGAGACTGTTCCTTCAATAGCAGAGGCCTTGGTTGATTCCAAATCAGGAAAGCGAAGTAAGATTACTTGGTTATTGATGCAAGGCAATGACTCCGTTGGAAAAAGAAGGATAGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAGCTGATAAGATCCTTCACTTGGACATGCAGAAGAAAGACAATTCAATAGCTTCATTTTATGAAATGCTGGCAGGAGCATTGAAAACCCATCAACAGCTTGTGGTGTTAATAGAAAATGTTGACTTTGATGATGCCCAATTCAAGAAATTACTTTCTGATGGTTTTGAAACAGGAAAGTTTGAAAATTTAACTAGGAAAATGGAGAAGTTAGGCCAATTGGTATTCATATTATCAAATGGTGATTCCACAAGCAATAAAGAGAAGAATCAGGACAATGTGATCAAGTTGTTGTTGCAGGTAAGCAAAACCAAGCCTAATATAGAGACACCTTGTTTAGGCTACAAACGAAGAGCTGAACTGGATTTGTTTTCGAAGATCAAGATTCCACGAATCGAAGAGAACAAAGAAGCATTGTTGCTTTCGGAACAAGGGAGCAGAAAGAAAGACTTTTCAAGACAGTCAAGTTTTAACACCCTTGATCTGAATTTGAAGGCTGGTGAAGAGGATGATAAAACAGGAAAAAGTAACCCCAATTCAAGTGATATGACTAGAGAAACTATAGTTGATTCACTTAGCCTAAATGGGCTTCTTGACTCAATTGAGAACAGGTTTGAGTTGAACACAAGTCCAGCTAGGGAAAAGGAGATAACAGAGTTATTCCTATCCAAAATCAAGGAGTCTTTTGAAGAGGTTTTTGGGAAACAATATGTGGTGAATTTTAGTGTAGATGAGAGGGTGATTGAGGAAATGTATGTAGGGTGTGGTTTTTTTACTAACAGCTTATTTGAGAAATGGCTCAGAGACATTTTTCAAAACAGCTTGCAGACAGTTAAGTTTGGAGGGAAAGAGGGTATAGTTGTTAGGCTTACTTGGGGTGGTAAAGGAGATAGAAAATTGGATAATGGGTTCATGAGTTCAACTCTGCCCAAGACCATCCAAGTTAACTACTTAATGGAGTGA 3090 0.4094 MRSGGCALQQTLTAEAASVLKHSLGLARKRGHAQVTPLHVAATLLSLRASSFTRGCLKSQHHQTSHPLQCRALELCFNVAINRVPTRPAPFIHNSHQPSLSNALIAALKRAQAHQRRGSIEQQQQQPLLTARVELEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSSLPSSVFQCYNTSGGVFSSPCSPSASESNTLSFRKNYFLDAYGSEFNNQILFSPTNKEPVYPFPITGATASFNKDDIKVVLDTLLRKKKKKNTVIVGDSVSFTEGLVREVMRMFERSEVPDELKSTNFIKFQLAPVSLRYMKRDEVEMKVLELKRKVDSVALRGGRGCIFYIGDIKWIMEGSFSKKKEGSLDVEFSGYNPVEHLVSEIGKLFCDCGTSNTKVWLMATASYQTYMKCQMKQSPLESLWALQAVPVPSGGLALSLHASCGVCAVSGLCQNLLSKLKSMVGCVLDSKMTVSQNQSQMLETKLLNKEQQDKLNCCEECTYYNKEAQFLEKDQKKMLPFWLQSHNTETNQKDELIKFRTKWNRLCHCHHQSQQYHNKSNKNYNWNAKIYPYNSSSSISFANNTNSSNLVPCFQPQQSCIEYNFSDTKQETDPVVDSLGGTEEGNEVKTTLALGNGGGSGEPVGDITDRTLQRAHICKLLQENIAWHSETVPSIAEALVDSKSGKRSKITWLLMQGNDSVGKRRIALAVAESVFGSADKILHLDMQKKDNSIASFYEMLAGALKTHQQLVVLIENVDFDDAQFKKLLSDGFETGKFENLTRKMEKLGQLVFILSNGDSTSNKEKNQDNVIKLLLQVSKTKPNIETPCLGYKRRAELDLFSKIKIPRIEENKEALLLSEQGSRKKDFSRQSSFNTLDLNLKAGEEDDKTGKSNPNSSDMTRETIVDSLSLNGLLDSIENRFELNTSPAREKEITELFLSKIKESFEEVFGKQYVVNFSVDERVIEEMYVGCGFFTNSLFEKWLRDIFQNSLQTVKFGGKEGIVVRLTWGGKGDRKLDNGFMSSTLPKTIQVNYLME 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1238 1029 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1002 - -
Lal19g1238 1029 PANTHER PROTEIN SMAX1-LIKE 5 1 1002 - -
Lal19g1238 1029 Pfam Clp amino terminal domain, pathogenicity island component 133 169 IPR004176 -
Lal19g1238 1029 Pfam Clp amino terminal domain, pathogenicity island component 26 45 IPR004176 -
Lal19g1238 1029 Gene3D - 9 171 IPR036628 -
Lal19g1238 1029 Gene3D - 637 829 IPR027417 -
Lal19g1238 1029 SUPERFAMILY Double Clp-N motif 12 167 IPR036628 -
Lal19g1238 1029 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1238 Lal-Chr19 15634445 15643783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1238 - - gmx:100816045 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1238 19 15634445 15643783 Lal19g1238 19 15634445 15643783 ECH
Lal14g1689 14 17056790 17065631 Lal19g1238 19 15634445 15643783 LSH
Lal7g1094 7 16914412 16918432 Lal19g1238 19 15634445 15643783 LSH
Lal19g1238 19 15634445 15643783 Lal17g1556 17 16997908 17001634 PCT
Lal17g1556 17 16997908 17001634 Lal19g1238 19 15634445 15643783 PCT