Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1556 ATGCGATCAGGAGCTTGTACATTGCAGCAGACCCTCACAGCTGAGGCTGCTTCAATCTTGAAGCACTCTCTTGTGTTGGCACGCCGAAGAGGCCATGCACAGGTCACCCCTCTGCATGTTGCAGCCACATTGCTGAGCCTAAGGGCAAGTAGTCCCTTCAAAAGGGCATGTCTGAAATCTCAGCCACAGTTTCAAACTTCATCACACCCTCTTCAATGCAAAGCTCTTGAGCTTTGCTTCAATGTTGCACTCAACAAGCTTCCAACGACACAAGGTCCTAGTTTGTTACACAATCAACCTTCTCTTTCCAATGCTCTCATTGCTGCACTCAAAAGAGCACAAGCACACCAAAGAAGAGGGTGCATAGAACAACAACAACAACAACCACTTTTCATTGTAAAAGTGGAGTTAGAACAACTCATCATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGTTTCTCTAGCATTGCTGTGAAGAACAACATGGAACACAACAAAACTTCAACAACTTCTGTTTTTCACAACAATTCTGTTGGTGCTGTTTTCTCTTCTCCTACTTCACCTAGTGAAAACCAAAGAAAGCATCATTTTTTGGGTTCTTACACCAATTCTCATGACTATAACACTACTCAAGTTCTGTTTTCTTCACAAAAGAAAGCACCATTGATGTTTCCCATCACTCATGAGGAAGATATTAAAATGGTTTTAGATATTCTTTTAAGGAAGAATAAGAAAAAGAATAGTGTTATAGTTGGTGACTCTTTATCATTAAATGAAGGCCTTGTGGATGAGATAATGAGAAAATTTGAAAGAGGAGAAGTACCTAATGAGTTGAAGACAAAAAATTTCATCAAGTTTCAGTTTTCTACTTTGAGGTTCATGAATAAAGATGAAGTGAAAATGAACCTTTCATATCTGAAAAAAAAGGTAGATTCTGTTACATCAAGTAGAAGGGGTGCTATTTTTTATGTTGGAGATTTGAAGTGGATAGTGGAGGGAATTAGTTTGTGTGAAAAAGAGGGTGGTTGGGGTAGTTATAACCATGTTGATCATGTAGTTGAAGAAATAGGGAAATTGTTTTATGAATTGGGAAATTCAAACACTACTAAGGTTTGTCTTATAGGGACAGCAAGTTATCAAACATACATGAGATGTCAAATGAGACAACCTCCTCTTGAGACTCAGTGGAATCTTCAGGCTGTTTCTGTTCCATCTGCTGGACTTGGTTTCACTCTTCATGCTTCCAGTGTCTATGATTCATCATATCCTTGGTGGCCAAACCAAACTAGTGTCTTCACTGATTCAAGTTCTATATCTTTTGCTGATTCTGCTACAACAAGACCAGCTTATATGTATCAACAATCATGCACCATTGAATTCAATTTCAGCAATGATGTAGCTGATGAGAAAAAAGAAGAAACAACAATCTTGGATTCTATTAAGAGCATTGTTGGAAATTCAACATATAGTGATGGTTCAAGGGAAAAGGTGGAGAATATATGTGATAATACAACACTTGTTCAACAAGCTCATATTTGTAAAATGTTGCAGGAGAATGTGCCATGGCACTCTGAGAAAGTTACTTCAATATCAGAAGCATTGGTTCTTGGTTGTTCCAAATCAGCAAGGCAAAAAAGTACTACATGGTTATTCATGCAAGGAAATGATTATGCTGGGAAAACACGGTTGGGGCGCGCAATTGCAGAATCATTTTTCGGCTCAGTGAATGATGATAAGTTCCTTCACTTGGACATGATGATCAAAACATGTGAAGAAATAGGAACAAAAACCCCATTTTCTGAAATGCTGGATGCAGCATTGAAATCACATGAACAGCTTGTGATTTTGATAGAAAATGTTGATTCTGCTGATGCCCATTTCAAGAAGTTCCTTGCAGATAAATTTGAGACATTAAAGCTTGGAAATTTATGTACCAATGAGGAGAATTCATGCAATGCAATATTCATATTGAGTAATGATGGTTGCACTAAAAGAACCTATAATAACAAGAACTATGTGATGAAACTTGTGTTGCAAGTTAGTGAAACCAACTCTACATTGAAGCCATCATCATCACCTTGTTTCAGCCACAAGAGAAATCTATCAGAACTTGATTTGTTTACCAAGATCAAGAAGGCAAGGAATGAAGAAAAAGAGTTTGCTAGAGAATCAAGGTTTAACACTCTTGACCTGAACATAAAAGCTGAGGATTATGAGGAAAATAGTCCAAATTCAAGTGATTCAACTAGAGAAATTGTAGCTTATAATCTGAACTCAAATGAGTTTGTTAACTCAATTAAGAATAGATTTGAGTTAAACCAAAGTCCAACTAGGGAGAGAAAAATGAAAGAGATGTTTATGTTAAAAATCAAAGGGTCTTTTGAAGAGGTTTATGGTGTAGTGAATTTTAGTGTAGAGGATAAGGTGATAGAGGAAATTGGTGTAGGGTGTGGTTGTTTTACTAATAGTGTGTTTGAGAAATGGCTCAAAGACATTTTTCAAACAAGTTTAAGGATAGTTAACTTTGGTGGGAAGGAAAAGGAAAATGAGGGTATAGTTTTTACACTTTGTTGGGGTGGTAAAGGTCACAAAATATGTGATAGTGGGTTCATGAGTTCATGTCTTCCCAACAATATTCAAGTTAACTACTGA 2670 0.3708 MRSGACTLQQTLTAEAASILKHSLVLARRRGHAQVTPLHVAATLLSLRASSPFKRACLKSQPQFQTSSHPLQCKALELCFNVALNKLPTTQGPSLLHNQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLFIVKVELEQLIISILDDPSVSRVMREAGFSSIAVKNNMEHNKTSTTSVFHNNSVGAVFSSPTSPSENQRKHHFLGSYTNSHDYNTTQVLFSSQKKAPLMFPITHEEDIKMVLDILLRKNKKKNSVIVGDSLSLNEGLVDEIMRKFERGEVPNELKTKNFIKFQFSTLRFMNKDEVKMNLSYLKKKVDSVTSSRRGAIFYVGDLKWIVEGISLCEKEGGWGSYNHVDHVVEEIGKLFYELGNSNTTKVCLIGTASYQTYMRCQMRQPPLETQWNLQAVSVPSAGLGFTLHASSVYDSSYPWWPNQTSVFTDSSSISFADSATTRPAYMYQQSCTIEFNFSNDVADEKKEETTILDSIKSIVGNSTYSDGSREKVENICDNTTLVQQAHICKMLQENVPWHSEKVTSISEALVLGCSKSARQKSTTWLFMQGNDYAGKTRLGRAIAESFFGSVNDDKFLHLDMMIKTCEEIGTKTPFSEMLDAALKSHEQLVILIENVDSADAHFKKFLADKFETLKLGNLCTNEENSCNAIFILSNDGCTKRTYNNKNYVMKLVLQVSETNSTLKPSSSPCFSHKRNLSELDLFTKIKKARNEEKEFARESRFNTLDLNIKAEDYEENSPNSSDSTREIVAYNLNSNEFVNSIKNRFELNQSPTRERKMKEMFMLKIKGSFEEVYGVVNFSVEDKVIEEIGVGCGCFTNSVFEKWLKDIFQTSLRIVNFGGKEKENEGIVFTLCWGGKGHKICDSGFMSSCLPNNIQVNY 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1556 889 Gene3D - 9 174 IPR036628 -
Lal17g1556 889 PANTHER PROTEIN SMAX1-LIKE 5 423 867 - -
Lal17g1556 889 PANTHER PROTEIN SMAX1-LIKE 5 1 422 - -
Lal17g1556 889 Gene3D - 492 730 IPR027417 -
Lal17g1556 889 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 423 867 - -
Lal17g1556 889 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 422 - -
Lal17g1556 889 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Lal17g1556 889 SUPERFAMILY Double Clp-N motif 12 163 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1556 Lal-Chr17 16997908 17001634 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1556 - - gmx:102660146 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1556 17 16997908 17001634 Lal17g1556 17 16997908 17001634 ECH
Lal14g1689 14 17056790 17065631 Lal17g1556 17 16997908 17001634 PCT
Lal7g1094 7 16914412 16918432 Lal17g1556 17 16997908 17001634 PCT
Lal19g1238 19 15634445 15643783 Lal17g1556 17 16997908 17001634 PCT
Lal17g1556 17 16997908 17001634 Lal14g1689 14 17056790 17065631 PCT
Lal17g1556 17 16997908 17001634 Lal7g1094 7 16914412 16918432 PCT
Lal17g1556 17 16997908 17001634 Lal19g1238 19 15634445 15643783 PCT