Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1066 ATGAAGGCAACACTAAGGTACTTAGCAGGAATTGCAGGCCCTAGTGGTTTTGGCTCTAATTCAACTGCAGAACATGTTACTCAACATTGTTTTCCCTTCCTTCCCTCTAATCTAACCGCTCTCATAACTGGTGCATCTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCAAGGGATTTGAAGAAGGCAAGTGAAGCCAGAGAGAATATCCTAAAGGAAAGTCCAAAAGCTGAGATTCTTCTTTTGGAAATTGATCTTAGCTCTTTTGCTTCTATACAGATATTTTGTTCACAGTTCTTAGCTTTAGAACTGCCCCTTAATATTCTTATAAATAATGCAGGAATTTACTCTCCAAACTTGGAGTTCTCCGAACAGAAAATTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAATATGCTACTTGAGAATATGATAGATACAGCAAAGGATACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGAAGTCCATAGCTGGGTGAAAGGTGCTAATTCTTTTCATTTCAACGACATGGTCACCGGAAAAAATTATAATGGCACAAGTGCATATGCTCAATCAAAATTGGCCAATATTCTGCATGTGAAGGAAATGGCCCTACAGCTTAAGGCAAGGAATGCAAGAGTAACTATTAATGCAGTGCATCCAGGTATTGTGAAGACAGAAATTATTAGAGCTCGCAAGGGCTTCATAACTGAATCCGTTTTTTTCATTGCATCAAAGTTCCTCAAATCAACTTCACAGGGTGCATCAACAACATGTTATGTTGCTCTAAGTCCACAAACAAAAGGGGTGAGTGGAAAGTACTTCACAGATTGTAATGAGAGTAATTGCTCAGTTCTAGCAAATGATGAATTGGAAGCTCAAAAGCTATGGAACAATACTCTTGCCTTGCTTCACAAACAACTAAGTCAAGCATCAAGTTGA 996 0.3835 MKATLRYLAGIAGPSGFGSNSTAEHVTQHCFPFLPSNLTALITGASSGIGAETARVLAKRGVRVVIGARDLKKASEARENILKESPKAEILLLEIDLSSFASIQIFCSQFLALELPLNILINNAGIYSPNLEFSEQKIEMTFATNYLGHFLLTNMLLENMIDTAKDTGIQGRIINVSSEVHSWVKGANSFHFNDMVTGKNYNGTSAYAQSKLANILHVKEMALQLKARNARVTINAVHPGIVKTEIIRARKGFITESVFFIASKFLKSTSQGASTTCYVALSPQTKGVSGKYFTDCNESNCSVLANDELEAQKLWNNTLALLHKQLSQASS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1066 331 Gene3D - 35 327 - -
Lal19g1066 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lal19g1066 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lal19g1066 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Lal19g1066 331 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lal19g1066 331 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lal19g1066 331 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lal19g1066 331 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Lal19g1066 331 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Lal19g1066 331 Pfam short chain dehydrogenase 39 179 IPR002347 -
Lal19g1066 331 Pfam short chain dehydrogenase 198 248 IPR002347 -
Lal19g1066 331 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 327 - -
Lal19g1066 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 299 IPR036291 -
Lal19g1066 331 CDD retinol-DH_like_SDR_c_like 39 315 - -
Lal19g1066 331 PANTHER RETINOL DEHYDROGENASE 4 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1066 Lal-Chr19 14415963 14419517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1066 19 246 Acyl Lipid Metabolism Gene Families AT1G63380 29.487 1.07e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1066 - - gmx:100776567 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1066 19 14415963 14419517 Lal19g1066 19 14415963 14419517 ECH
Lal16g1207 16 8383902 8387977 Lal19g1066 19 14415963 14419517 LSH
Lal19g1066 19 14415963 14419517 Lal17g0904 17 7004135 7010439 PCT
Lal17g0904 17 7004135 7010439 Lal19g1066 19 14415963 14419517 PCT