Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0904 ATGAAGGCAGCACTAAGATACTTAGCAGGAATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCTGAGCAAGTTACTCAAGATTGTTCTTCCTTCTTTCCAACAGATCTAACTGCTCTCATTACCGGGGGAACATCTGGTATTGGATCAGAAACAGCAAGGGTGTTAGCAAAGAGAGGAGTGAGAATTGTGATTGGTGCAAGGGACATGAATAAGGGCAGAGAAATGAAAGAGAATATACAAAAGGAGAGTCCATATGCTAAGGTTATTCTGTTGCAGATTGATCTTAGTTCTTTTGCTTCTGTCCAGAGATTTTGTTCTCAGTTTTTAGCTTTACAACTTCCCCTTCATATTCTCATAAACAATGCAGGGATGTTCTCTCAAAACTTGGAGTTTTCTGAAGAGAAAATTGAGATGACATTTGCTACAAATTATTTAGGTCACTTTTTGTTAACAGAAATTCTATTAGACAGAATGATAGAAAGTGCAGAGAAGACAGGTGTTGAAGGGAGAATAATAAATGTTTCTTCTGTGATCCATAGCTGGGTAAAGAGAGATGCTTTTCGTTTCAATCACATACTCACAGGAACAAACTACAATGGGACACGCGCTTATGCTCAGTCAAAATTGGCCAATATTCTGCATGCAAAGGAAATAGCAAGACAACTAAAGGAGAGGAATGCAAGAGTGAGTATCAATGCAGTACATCCAGGAATTGTAAAGACAGGAATTATTAGAGCTCATAAGGGCTTACTAACCGATTCCTTATTTTTCATTGCATCAAAGTTACTTAAATCTACATCACAGGGTGCATCAACTACATGTTATGTGGCTCTGAGCCCAAAAATAGAAGGAATAAGTGGGAAATATTTCACTGATTGTAATGAGAGTAATTGTTCCAATCTAGCAAATGATGAATGGGTAGCTCAAAAGCTATGGAATAACACACATGCCTTGCTTCACAAGCGACTATGTCAAGCAACAATTTGA 993 0.3827 MKAALRYLAGIAGPSGFGSNSTAEQVTQDCSSFFPTDLTALITGGTSGIGSETARVLAKRGVRIVIGARDMNKGREMKENIQKESPYAKVILLQIDLSSFASVQRFCSQFLALQLPLHILINNAGMFSQNLEFSEEKIEMTFATNYLGHFLLTEILLDRMIESAEKTGVEGRIINVSSVIHSWVKRDAFRFNHILTGTNYNGTRAYAQSKLANILHAKEIARQLKERNARVSINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKSTSQGASTTCYVALSPKIEGISGKYFTDCNESNCSNLANDEWVAQKLWNNTHALLHKRLCQATI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0904 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Lal17g0904 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Lal17g0904 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lal17g0904 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lal17g0904 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lal17g0904 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lal17g0904 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lal17g0904 330 Gene3D - 33 325 - -
Lal17g0904 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Lal17g0904 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lal17g0904 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lal17g0904 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lal17g0904 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Lal17g0904 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0904 Lal-Chr17 7004135 7010439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0904 17 258 Acyl Lipid Metabolism Gene Families AT3G46170 28.340 3.05e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0904 - - gmx:100801384 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0904 17 7004135 7010439 Lal17g0904 17 7004135 7010439 ECH
Lal19g1066 19 14415963 14419517 Lal17g0904 17 7004135 7010439 PCT
Lal17g0904 17 7004135 7010439 Lal19g1066 19 14415963 14419517 PCT