Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1207 ATGATGTTAGTGCGAATCGCAATAGAATGTGGTTTATTGGTTGGAAAGGGGTATCTGGCTTCTCAGCTTCTTCCACAGCCGAACAAGTTACTCAAGGCATTGATGGAAACTCCCTCACTGCAATCGTCACAGCGTAGATCAGTCGGCGCGGGGAGTTGTTCTAGCTTAACCAGAGGTCTCGAGTTCGAGTGTCTTGTGTTTGCTAGGGAGTGCTTTGCCGCTCATAGAGACACAGTTCAAGCAGGATTGCCTCCAGTTGGTGGAGGATACACATGCTTTAGACAAAAAGTCCTTTTATCTTGTTCTTTGTCCAATTCTGATTGTTGGGTCACCGTAGTACAGTGCTTATTTAGTTCAATTTCAGGAGCATCAAGTGGTCTTGGTCTGGAGACCACCCGGGTTCTTGCATTGCGTGGTGTCCATGTTGTTATGGCAGTAAGGAATGTGGAAAATGGTATGAATGTAAAAGAAACAATACTTAAGGAAATTCCCGCTGCCAAAATTGATGTTATGGAGTTAGATCTTTGCTCTATGGCATCTGTGAGGAAATTTGCAGCAGATTATAATTCATCTGGTCGTCCACTCAATATCCTAATTAACAATGCAGGGGTAATGGCAACCCCTTTCATGCTTTCCCAAGACAACATTGAATTGCAGTTTGCGACCAATCATTTAGGTCATTTTCTCTTGACAAACCTTTTGTTAGAAACTATGAAAAAAACTGTACGTGAAAGTAACTGGGAGGGAAGGATAGTTATTCTATCATCAGAGGCACATAGGTTCCCATATAGAGAAGGGATTTGTTTCGAAAAGCTTAATGATGAATCAGGATACAGCAGTTATTTTGCTTATGGACAATCAAAACTAGCTAATATATTGCATGCAAATGAGCTGGCAAAACGCCTGAAGGAAGAAGGAGTGGAAATAACTGTTAACTCCCTTCATCCCGGATCAATTATTACAAATATTCTGCGCCACCATAGTTATATGAATGCCTTTGCTAATATGGTGGGCAAGTACTTCCTGAAAAATGTGCAGCAGGGAGCTGCTACACAATGTTACGTGGCATTGCATCCACAAGTGAAGGGAATAACTGGTGAATACTTTATGGATAGCAATAAGGCAAAACCAACCTCTCTGTCTCAAGATTCGGAGCTGGCTAAAAAGCTATGGGAATTCAGCTTAAGCCTGACTAATAATCCAAAGTAG 1209 0.4177 MMLVRIAIECGLLVGKGYLASQLLPQPNKLLKALMETPSLQSSQRRSVGAGSCSSLTRGLEFECLVFARECFAAHRDTVQAGLPPVGGGYTCFRQKVLLSCSLSNSDCWVTVVQCLFSSISGASSGLGLETTRVLALRGVHVVMAVRNVENGMNVKETILKEIPAAKIDVMELDLCSMASVRKFAADYNSSGRPLNILINNAGVMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRESNWEGRIVILSSEAHRFPYREGICFEKLNDESGYSSYFAYGQSKLANILHANELAKRLKEEGVEITVNSLHPGSIITNILRHHSYMNAFANMVGKYFLKNVQQGAATQCYVALHPQVKGITGEYFMDSNKAKPTSLSQDSELAKKLWEFSLSLTNNPK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1207 402 PRINTS Glucose/ribitol dehydrogenase family signature 117 134 IPR002347 -
Lal16g1207 402 PRINTS Glucose/ribitol dehydrogenase family signature 193 204 IPR002347 -
Lal16g1207 402 PRINTS Glucose/ribitol dehydrogenase family signature 243 259 IPR002347 -
Lal16g1207 402 PRINTS Glucose/ribitol dehydrogenase family signature 284 303 IPR002347 -
Lal16g1207 402 PRINTS Glucose/ribitol dehydrogenase family signature 307 324 IPR002347 -
Lal16g1207 402 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 117 398 - -
Lal16g1207 402 Pfam short chain dehydrogenase 120 266 IPR002347 -
Lal16g1207 402 Gene3D - 118 400 - -
Lal16g1207 402 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 373 IPR036291 -
Lal16g1207 402 CDD retinol-DH_like_SDR_c_like 120 391 - -
Lal16g1207 402 PANTHER RETINOL DEHYDROGENASE 117 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1207 Lal-Chr16 8383902 8387977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1207 120 377 Acyl Lipid Metabolism Gene Families AT1G62610 25.461 2.93e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1207 - K19329 gmx:100793781 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1207 16 8383902 8387977 Lal16g1207 16 8383902 8387977 ECH
Lal16g1207 16 8383902 8387977 Lal19g1066 19 14415963 14419517 LSH