Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0978 ATGATACGTCTCTATAGGCAAAGTAATGGGAAACAAGAAGAAAAGAGTGTGAAGTTACCAAATTGTAGCTTCTCATTGGAAAAGGAAGCTTCAGTCTTAAAGAGTAGGGACATTCCTCATCATTGGTGGTTAGTGGTTCAGATTTTGATTGCTGCTATAAGAGTTAAGGTGCTGGCATTAAGTTTCTGGCAGTACCCTTCTGCCACAAAATATAAGATGGCAGCTGAACTAGTGAGTGCTGCAACAACTGAGAAGCTGGTCGAAATTGATTGGATGAAAAATATTGCAATTTGTGAATTAGTTGCTCATGATCACAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAGAGACTGGGTAACAAAAAACCCAATACTCAACTTTATGCAGTCATGTTGTTGGAAATGCTTATGAACAATATTGGAGATCATATTCACAAGCAGGTGATTGATACTGGAATAATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCGAATTTCCCTGTACGGGAGCGTATATTTCTCCTACTCAATGCTGCACAAACATCACTTGGCGGTGCTTCTGGAAAGTTTCCGCAGTATTATAATGCATATTATGATTTGGTGTGGAAGGGAGATTACCTCTTTGAGGTCTGCCACAAGCCTCAACAAAGGCTTCCCATGGTACTTACAGATCAGATGGCCAATGATAAGAGGTGTATTCCTGAGTTCTTATTTGGACAGGTTAGTTGGCACGCACTGCATATGCTACCTTTGGGTAAGGGTGGTCAGAGTGCTGGGGTGCAGTTTCCTCAAAGGGCTCAAGCTGTCGAATCAAACCGACCTAGTTCACAACCTAATAGGACTAATAATGTACCAAACAAGGAGCATGCCTTGCCTAGACATGGAGGAGTTGCTCAGCCAGCAGATTCCCAAACTGTTCCTGGATCTAGGTGGCTTTTACTTTTCAGTTTTAGTGTACTTGTGGTTGATAGCATTATTCAAAAGGCTAGTGATGTATTGGAAGTTCTAAAAGAAGTTCTTGATGCTGTTGATGCCCAACATTCTCAGGGAGGCAGGGACGAGTTCACCCTTGACCTTGTCGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTAATGGCTTCTAGAGATGAGAGAATAGTTTCTAGAGCAATTGAATTGAATGAACAGCTTCAGCAAGTTCTTGCAAGACATGATGACATGCTTTCTGCCAAAGCTACAACAACTGCTAATCACTTTGGCCATGAAGATGAGGAAGAAGAACCCGAACAATTGTTCCAAAGATTACGCAAAGGAAAGGCATGTGCAAGGCCTGAAGATGAAGAGGCTGAACCCGAGTTCCCTCGCTTGGGTTTGCTTGAAGAGAGACTTAACTGTCCACTAATACGACCACTCTCGTTGAGTCCATCTCGACGAGCTAATACTCGTCCTGCACCTGCTCCAATTCCACCCCCAAGTGCAAGGCAGAACAGCGAGCTTCCTCATGTAGCCATTCCGCCGCCGCCGGTAAAGCACATCGAGAGGGAAAGATTTTTTCAGGAAAATAAGAAAGGTGGTGCAACCTTGGCTGGACACCTAAGAGGCCTCTCCTTGAATAGTCACAATGGCAGCAGTTCTCATAGTGGTAGCCTTGATTTTAGTGACTGGTCTCTTTAG 1668 0.4305 MIRLYRQSNGKQEEKSVKLPNCSFSLEKEASVLKSRDIPHHWWLVVQILIAAIRVKVLALSFWQYPSATKYKMAAELVSAATTEKLVEIDWMKNIAICELVAHDHRQARDVVKAIKKRLGNKKPNTQLYAVMLLEMLMNNIGDHIHKQVIDTGIIPILVKIVKKKSNFPVRERIFLLLNAAQTSLGGASGKFPQYYNAYYDLVWKGDYLFEVCHKPQQRLPMVLTDQMANDKRCIPEFLFGQVSWHALHMLPLGKGGQSAGVQFPQRAQAVESNRPSSQPNRTNNVPNKEHALPRHGGVAQPADSQTVPGSRWLLLFSFSVLVVDSIIQKASDVLEVLKEVLDAVDAQHSQGGRDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQQVLARHDDMLSAKATTTANHFGHEDEEEEPEQLFQRLRKGKACARPEDEEAEPEFPRLGLLEERLNCPLIRPLSLSPSRRANTRPAPAPIPPPSARQNSELPHVAIPPPPVKHIERERFFQENKKGGATLAGHLRGLSLNSHNGSSSHSGSLDFSDWSL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0978 555 MobiDBLite consensus disorder prediction 267 304 - -
Lal19g0978 555 MobiDBLite consensus disorder prediction 469 499 - -
Lal19g0978 555 SMART VHS_2 74 206 IPR002014 GO:0035091|GO:0043130
Lal19g0978 555 MobiDBLite consensus disorder prediction 531 555 - -
Lal19g0978 555 Gene3D - 323 415 IPR038425 -
Lal19g0978 555 Pfam GAT domain 336 406 IPR004152 GO:0035091|GO:0043130
Lal19g0978 555 SUPERFAMILY GAT-like domain 327 407 - -
Lal19g0978 555 CDD GAT_GGA_like_plant 327 405 - -
Lal19g0978 555 Pfam VHS domain 76 183 IPR002014 GO:0035091|GO:0043130
Lal19g0978 555 PANTHER TOM1-LIKE PROTEIN 259 552 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal19g0978 555 PANTHER TOM1-LIKE PROTEIN 73 207 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal19g0978 555 ProSiteProfiles GAT domain profile. 319 407 IPR004152 GO:0035091|GO:0043130
Lal19g0978 555 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 73 207 - -
Lal19g0978 555 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 259 552 - -
Lal19g0978 555 MobiDBLite consensus disorder prediction 532 555 - -
Lal19g0978 555 MobiDBLite consensus disorder prediction 267 288 - -
Lal19g0978 555 Gene3D - 66 207 IPR008942 -
Lal19g0978 555 CDD VHS 74 202 - -
Lal19g0978 555 SUPERFAMILY ENTH/VHS domain 76 205 IPR008942 -
Lal19g0978 555 Coils Coil 328 348 - -
Lal19g0978 555 ProSiteProfiles VHS domain profile. 81 210 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0978 Lal-Chr19 13702917 13709051 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0978 - - palz:118051947 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0978 19 13702917 13709051 Lal19g0978 19 13702917 13709051 ECH
Lal14g1406 14 15350919 15356976 Lal19g0978 19 13702917 13709051 LSH
Lal19g0978 19 13702917 13709051 Lal17g0788 17 5767972 5774492 PCT
Lal17g0788 17 5767972 5774492 Lal19g0978 19 13702917 13709051 PCT