Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0788 ATGGCAGCTGAGCTAGTCAATGCTGCAACGAGTGAGAGACTGGCTGAAACTGATTGGGCAAAAAATATTGAAATATGTGAATTAGTTGCTCATGATAAAAGGCAAGCTAGAGATGTCGTTAAAGCTATAAAAAAGAGACTGGGTAGCAAACACCCTAATACTCAACTTTATGCTGTTATGTTGCTGGAGATGTTGATGAACAATACTGGGGAGCATATTCATGAGCAGGTGATTGATACAGGGATCATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCAGATCTACCAGTGAGGGAGCGGGTATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCCGGAAAGTTTCCCCAGTATTACAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTTCTCAAAGGGCTCAAGCAGTCCAATCAAATCGTCCTAGTTCACAACCTACTAGAACTAGTAATGTGCCAAACAGGGAGCAGGCCTCGCCTAATCATGAAGGGGTTGCTAAGCAAGCAGAGTCGCAGCCTGTCCCCGAATCCAGCATCATTCAAAAGGCTAGTAATGCATTAGAAGTTCTGAAAGAAGTCCTTGATGCTGTTGATGCTCAGAATCCTCAGGGAGCAAGGGACGAATTCACTCTTGACCTTGTAGAGCAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTAGTGATGGCTTCTCGAGATGAGAGGGTAGTTTCTCAAGCTATTGAACTAAACGAGAAGCTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTTCTGGCAGAGCTACAACAACTGCTACTCGATTTGACCATGAAGAAGCCGAGGACGAAGAGGACCCTGAACAGTTAGTCCGAAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCCGAGGAGGAAGAGACTAAAACCGAGATCCCTCACTTGGGTTTGCTTGGTGAGAGACTCAACCGTCCACTAATACGGCCACTCACTTTAGAGCCATCTCGAGAAGCTAATGCTCGTTCACCACCCGCCGTAATCCCACCGCTACGTGCAAAGCATAATGGAGAGCTTCCTCGTGCTGCAATTCCGACACCACCTGCAAAACAGAATGGGGAGCTTCTTCCTACTGCCATTCCGCCGCCACCGGCAAAATACACCGAGAGGGAGAGATATTTTCAGGAAAACAAGGATGGTTCTAATGTGGCTGGCCACATGAGAGGCCTCTCTTTGCATAGACGAAGTGGTAGCAATTCTCACAATGGAAGCTTTGATTGA 1278 0.4585 MAAELVNAATSERLAETDWAKNIEICELVAHDKRQARDVVKAIKKRLGSKHPNTQLYAVMLLEMLMNNTGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERVFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFSQRAQAVQSNRPSSQPTRTSNVPNREQASPNHEGVAKQAESQPVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERVVSQAIELNEKLQKVLARHDDLLSGRATTTATRFDHEEAEDEEDPEQLVRRLRKGKACARPEEEETKTEIPHLGLLGERLNRPLIRPLTLEPSREANARSPPAVIPPLRAKHNGELPRAAIPTPPAKQNGELLPTAIPPPPAKYTERERYFQENKDGSNVAGHMRGLSLHRRSGSNSHNGSFD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0788 425 PANTHER TOM1-LIKE PROTEIN 1 425 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lal17g0788 425 Gene3D - 2 136 IPR008942 -
Lal17g0788 425 MobiDBLite consensus disorder prediction 142 184 - -
Lal17g0788 425 Pfam VHS domain 5 111 IPR002014 GO:0035091|GO:0043130
Lal17g0788 425 SUPERFAMILY ENTH/VHS domain 4 137 IPR008942 -
Lal17g0788 425 Coils Coil 187 207 - -
Lal17g0788 425 MobiDBLite consensus disorder prediction 142 165 - -
Lal17g0788 425 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Lal17g0788 425 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 425 - -
Lal17g0788 425 MobiDBLite consensus disorder prediction 365 425 - -
Lal17g0788 425 CDD VHS 2 130 - -
Lal17g0788 425 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lal17g0788 425 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Lal17g0788 425 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lal17g0788 425 CDD GAT_GGA_like_plant 186 264 - -
Lal17g0788 425 Gene3D - 179 275 IPR038425 -
Lal17g0788 425 SUPERFAMILY GAT-like domain 144 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0788 Lal-Chr17 5767972 5774492 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0788 - - gmx:100785131 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0788 17 5767972 5774492 Lal17g0788 17 5767972 5774492 ECH
Lal14g1406 14 15350919 15356976 Lal17g0788 17 5767972 5774492 PCT
Lal19g0978 19 13702917 13709051 Lal17g0788 17 5767972 5774492 PCT
Lal17g0788 17 5767972 5774492 Lal14g1406 14 15350919 15356976 PCT
Lal17g0788 17 5767972 5774492 Lal19g0978 19 13702917 13709051 PCT