Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1600 ATGAAAACAGAGGCACGTAAACGCACTCTCATTGGTCTCTCTCGTGGGGACGGTTCTCAATCACTTACTATCATGGATTCCCCACAATCTGTTGTGTCACCATTGAAGACCTCAGGTTCCTTGTCTAAGGACATTGAAGTCAATGAAAAGGAAGTATTGGTTTGTAATCAACATGATGAATTCATTGGCGTTGTCGATGTTTATATACATCAGGCTAGGGACATTCAAAACATCTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGTTTGACTAGTGATCCTGAGAATACTGTCTCCACTAAGATTATCAATGGAGGAGGAAGGAACCCTGTGTTCAATGAGAATCTTAGCCTAAGCGTTAGGACCATCGATTCTGCTCTCAAATGTGAGATTTGGATGCTGAGCAGAGTGAAGAATTATCTTGAAGATCAGTTGCTTGGTTTTGCTTTGGTTCCTTTGTCTGAAGTGCTTGTGAAGAAAGATGCAAAATTAGAGAAAGAGTTCTTAGTTTCTTCAACTGATCTATTCCATTCCCCTGCAGGGTTTATTCAATTGTCTCTTGCTTACACTGGTGCTTCACCTGATGTTATGGCGATTTCCGCAATGCCTACTGATTTTGCTATTGACAGGGACTTGGAATCGGAAACATGTGATTCAATGGTTAGAGATTTAGATAAAATCGAGTTCCCTGATCCGAAAATCGTAAATGAAGATTACTTGATGGTTTCAGAATATTATGGAATTCCGTGTGATGAGAGTCAATGTACTAACAATAGTTTTGTCAACATGGACTCTGAGAATCACAGTTCTGAAGAAGCAGGTGTTAATCTTGTGGAAAGCTTCTCAACATGCAGTTTTGAGTCTATCCAACCTTCTAAGGTTGATAATGATTCTCCACCAAATGGAGTTTCCTCTCCTTCAGCGGCTGCAAGCTCGGACTCATTCGATGCTGCTTCTGTTTCGAAGTGTCCAGTTCAGGAACAAGTTTCAGGCACAAAAGAGAAAATTGTGGATGTCAAAGATGGTGATAGTAATTCCTCAAATGGTGTAGTGAGTGAGTCATTTCCAAAGCCTTTTGTGAGAGTAAACATTGAGAGTGAGGGAAAGGTGGTGCAGCAGGACATAGTAGATATGTACATGAAGAGCATGCAACAATCATTAGCAAACATGAAACTTCCCTTGGACTTTGAAAGTGGACCAAATAGTTCAGGAAGCTCAACCTCTGAACAAAAACTACCAGCATCAAAGAAAGGTAACTCCTCCCGTGTATTTTATGGGAGCAGAGCTTTCTTTTGA 1302 0.4048 MKTEARKRTLIGLSRGDGSQSLTIMDSPQSVVSPLKTSGSLSKDIEVNEKEVLVCNQHDEFIGVVDVYIHQARDIQNICIYHKQDVYAKICLTSDPENTVSTKIINGGGRNPVFNENLSLSVRTIDSALKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVKKDAKLEKEFLVSSTDLFHSPAGFIQLSLAYTGASPDVMAISAMPTDFAIDRDLESETCDSMVRDLDKIEFPDPKIVNEDYLMVSEYYGIPCDESQCTNNSFVNMDSENHSSEEAGVNLVESFSTCSFESIQPSKVDNDSPPNGVSSPSAAASSDSFDAASVSKCPVQEQVSGTKEKIVDVKDGDSNSSNGVVSESFPKPFVRVNIESEGKVVQQDIVDMYMKSMQQSLANMKLPLDFESGPNSSGSSTSEQKLPASKKGNSSRVFYGSRAFF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1600 433 Pfam C2 domain 64 164 IPR000008 -
Lal18g1600 433 PANTHER EXPRESSED PROTEIN 36 433 - -
Lal18g1600 433 MobiDBLite consensus disorder prediction 291 313 - -
Lal18g1600 433 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 59 193 IPR035892 -
Lal18g1600 433 ProSiteProfiles C2 domain profile. 46 170 IPR000008 -
Lal18g1600 433 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 36 433 - -
Lal18g1600 433 SMART C2_3c 64 167 IPR000008 -
Lal18g1600 433 Gene3D C2 domain 57 202 IPR035892 -
Lal18g1600 433 MobiDBLite consensus disorder prediction 395 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1600 Lal-Chr18 17493828 17497152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1600 - - gmx:100781587 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1600 18 17493828 17497152 Lal18g1600 18 17493828 17497152 ECH
Lal3g0818 3 7493964 7498980 Lal18g1600 18 17493828 17497152 LSH
Lal18g1600 18 17493828 17497152 Lal6g0050 6 309896 314024 LSH
Lal3g0818 3 7493964 7498980 Lal18g1600 18 17493828 17497152 PCT
Lal18g1600 18 17493828 17497152 Lal18g1600 18 17493828 17497152 PCT
Lal18g1600 18 17493828 17497152 Lal6g0050 6 309896 314024 PCT
Lal18g1600 18 17493828 17497152 Lal3g0818 3 7493964 7498980 PCT
Lal6g0050 6 309896 314024 Lal18g1600 18 17493828 17497152 PCT