Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1587 ATGGAGTTCGATTCGTTCCCAATAGCTACATGCTCCAAAGACAACCAACAAATTTACCACGAATGGTTCAATTACGCTGATTCAGATAGCGATGGACGCATTACGGGGAATGATGCTACCAAGTTTTTCTCCATGTCCAATTTATCTCGCCAAGATCTTAAACAGGTGTGGGCTATTGCAGATTCGAAGCGACAAGGATATCTTGGTTTCACTGAGTTTATCATTGCTATGCAGCTAGTTTCTTTGGCACAATCTGGGCACCCAGTGACTAGTGATCTGCTGACTAGTGATGTTGATTTGACGAATCTGAATCCTCCAACGATGGAGGGTTTGGATGTAATACTAGCTAAGAGAAAGCATAAACAGAAAGATCTTGATGTGAATGGTAGTTCTCAGTTGCAGCCATCACCATCAAGTAATTGGTTTTCTGCAAAGTCAACAAAGATGGTGCCTCTGTCCTCAGTGACATCAATAATTGATGGCTTGAAGAGACTCTATGTTCAAAAGTTGAAGCCGTTAGAAGTTACTTACCGTTTTAATGATTTTGTATCACCGTTACTGACAAATAGCGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGAGCACATATTGGACCCGAGCCTACAACTGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGCATTCCTGGTAACACTATCGCTGTCCAAGCGGACATGCCATTTAGTGGTTTGACAACATTTGGAACAGCTTTTTTGTCAAAATTTGAGTGTTCTCAGATGCCTCATCCTCTACTAGAGCATATTACATTTGTGGATACTCCTGGAGTTCTTTCCGGAGAAAAGCAACGGACACAACGAGCATATGCTTTTACGGATGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTCCTGTTTGATCCTCACAAACTTGACGTCAGTGATGAGTTCAAGCGTGTGATATCATCCTTGCGTGGACATGATGACAAAATTCGAGTGGTTTTGAACAAGGCAGACAAAATTGATACTCAACAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAATACACCTGAAGTCATGCGTGTTTATATTGGCTCCTTCAACGACAAGCCTATAAATGATGCGGTCAGTGGCCCAATTGGGAAGGAACTCTTTGAAAAGGAACAGGATGACCTTCTTTCGGATCTGAAAGATATACCTAAGAAGGCTTGTGATCGAAGAATCAATGAATTTGTAAAACGTGCCCGGGCTGCCAAGATACATGCTTATATTATCAGTCATCTTAAAAAGGAGATGCCTGCAATGATTGGCAAGGCTAAAGCTCAGCAAAAGCTCATTGATAATTTGGAGGGTGAATTTGGAAAGGTACAGAGGGAGTTCCATCTACCTCCTGGTGACTTCCCAGATGTTGAACATTTCAGAGAGACCTTGAATGGTTATAATATTGACAAGTTTGAGAAATTGAAACCAAAAATGATACAAACAGTTGATGACATGCTAGGTTATGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTGA 1587 0.4127 MEFDSFPIATCSKDNQQIYHEWFNYADSDSDGRITGNDATKFFSMSNLSRQDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHPVTSDLLTSDVDLTNLNPPTMEGLDVILAKRKHKQKDLDVNGSSQLQPSPSSNWFSAKSTKMVPLSSVTSIIDGLKRLYVQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGAHIGPEPTTDRFVVVMSGPDERSIPGNTIAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYAFTDVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADKIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPINDAVSGPIGKELFEKEQDDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLIDNLEGEFGKVQREFHLPPGDFPDVEHFRETLNGYNIDKFEKLKPKMIQTVDDMLGYDIPNLLKNFRNPYD 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1587 528 Pfam Cytoskeletal-regulatory complex EF hand 18 80 IPR000261 GO:0005515
Lal18g1587 528 Coils Coil 451 471 - -
Lal18g1587 528 SMART eh_3 8 103 IPR000261 GO:0005515
Lal18g1587 528 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 177 413 IPR030381 GO:0005525
Lal18g1587 528 SUPERFAMILY EF-hand 11 87 IPR011992 -
Lal18g1587 528 Pfam Dynamin family 247 342 IPR045063 -
Lal18g1587 528 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Lal18g1587 528 ProSiteProfiles EH domain profile. 15 104 IPR000261 GO:0005515
Lal18g1587 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 450 IPR027417 -
Lal18g1587 528 CDD EHD 197 426 - -
Lal18g1587 528 PANTHER EH DOMAIN-CONTAINING PROTEIN 1-LIKE ISOFORM X1 20 526 - -
Lal18g1587 528 Gene3D - 9 108 - -
Lal18g1587 528 Gene3D - 198 411 IPR027417 -
Lal18g1587 528 CDD EH 19 85 IPR000261 GO:0005515
Lal18g1587 528 PANTHER EH DOMAIN 20 526 - -
Lal18g1587 528 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lal18g1587 528 Gene3D - 162 519 - -
Lal18g1587 528 Pfam Domain of unknown function (DUF5600) 418 519 IPR040990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1587 Lal-Chr18 17416816 17421865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1587 1 528 EF-hand Containing Proteins AT3G20290 81.284 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1587 K12483 - gmx:100804468 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1587 18 17416816 17421865 Lal18g1587 18 17416816 17421865 ECH
Lal18g1587 18 17416816 17421865 Lal22g0064 22 390678 391331 LSH
Lal18g1587 18 17416816 17421865 Lal6g0064 6 390145 395729 LSH