Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1336 ATGAAAATGGAAGCAGACGGAGATGGCGATGCCGGAAGAGAAGAAAATGGAATCTTACGGCGATCTAAGAAACTTTTGTCTGTGTTTGATTGCATTGCATTACCTCTCTTTTCTATAGTTCCAAGTACAACAACACAGCCATGGCTGCCACTCTTGGAACTGTCACTGTTACTACAAGTAGCTATTGTGATATTGCAGCTGAGCTTGAATGGGTCTGGAGCTGGAGCTTCAGTTCAAAGTTCAGTCTTTTTTGGAAGCAATTTGAAGAAGATTACCTCAAGGCTACCAAACACCAAGGTTTCATGTGGAAGCTTCAAAGTTGTTGCTGCGGAAGATATCGATCCGAAAAATCAGACCGACCAAGATAGATGGAAGGGTCTTGCCTATGATATTTCGGATGATCAACAAGACATTACAAGGGGAAAGGGTATGGTTGATTCCCTTTTCCAAGCTCCCTCGGGCGCCGGTACTCACTATGCAGTCATGAACTCTTATGAGTACATTAGTGGTGGCCTTAGACAATACAACTTGGACAATAACTTGGATGGTTTATACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACACTGCCCAACATCAAGGCATTATTTTTTTACAGGTTCCTCTCATTCTTGGTATATGGGGAGGTAAAGGTCAAGGAAAATCGTTCCAATGTGAACTTGTCTTCTCCAAGATGGGAATCAATGCAAGAACGGTACTCGATGGAACAGGACACATATGATATTTTGTTCTGTTCTCTTTGCCCTATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCTGGAGAACCAGCAAAATTGATAAGGCAAAGGTACCGTGAAGCTGCAGATATAATAAAGAAGGGGAAGATGTGTGCCCTCTTCATCAATGATCTCGATGCAGGAGCTGGTCGAATGGGTGGAACCACACAGTACACTGTGAACAACCAGATGGTGAATGCTACACTCATGAACATTGCTGATAACCCAACAAATGTGCAGCTTCCTGGTATGTACAACAAGCAAGAGAACCCACGTGTGCCCATCATTGTCACTGGTAATGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGGCGCATGGAGAAGTTCTACTGGGCACCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGAATTTTCCGCAGTGACAATGTTCCTGAAGAGGATGTTGTCAAGATTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGGGCATTAAGGGCCAGAGTATATGACGACGAAGTGAGGAAGTGGATTGGTAGTGTTGGTGTCGAGAGCATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGAGCAGCCCGAGATGACCTTGGCTAAACTCTTGGAATATGGTTACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTCCAACTTTCTGACAAGTACTTGAAAGAGGCTGCTCTTGGTGATGCTAATCAAGATGCTATCAAGAGAGGAGCTTTCTATGGCAAAGCAGCACAGCAAATAAATGTTCCGGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAAACTTTGATCCAACTGCTAGAAGTGATGATGGATCCTGCTTATACACATTGTAA 1659 0.4406 MKMEADGDGDAGREENGILRRSKKLLSVFDCIALPLFSIVPSTTTQPWLPLLELSLLLQVAIVILQLSLNGSGAGASVQSSVFFGSNLKKITSRLPNTKVSCGSFKVVAAEDIDPKNQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPSGAGTHYAVMNSYEYISGGLRQYNLDNNLDGLYIAPAFMDKLVVHITKNFMTLPNIKALFFYRFLSFLVYGEVKVKENRSNVNLSSPRWESMQERYSMEQDTYDILFCSLCPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIGSVGVESIGKKLVNSKEGPPTFEQPEMTLAKLLEYGYMLVQEQENVKRVQLSDKYLKEAALGDANQDAIKRGAFYGKAAQQINVPVPEGCTDPNAKNFDPTARSDDGSCLYTL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1336 552 Gene3D - 258 385 IPR027417 -
Lal18g1336 552 Gene3D - 386 498 - -
Lal18g1336 552 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 262 552 - -
Lal18g1336 552 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 65 210 - -
Lal18g1336 552 Pfam ATPase family associated with various cellular activities (AAA) 265 382 IPR003959 GO:0005524|GO:0016887
Lal18g1336 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 410 IPR027417 -
Lal18g1336 552 PANTHER - 65 210 IPR044960 -
Lal18g1336 552 PANTHER - 262 552 IPR044960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1336 Lal-Chr18 15815051 15822641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1336 - - gmx:100806240 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0273 6 1787125 1792141 Lal18g1336 18 15815051 15822641 ECH
Lal18g1336 18 15815051 15822641 Lal18g1336 18 15815051 15822641 ECH
Lal5g1169 5 14406204 14410893 Lal18g1336 18 15815051 15822641 LSH