Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0273 ATGATATTGCAGCTGAGCTTGAATGGCTCTGGAGCTGGAGCTTCAGTTCCCAGTTCAGCCTTCTTTGGAAGCAACTTGAAGAGGGTTACCTCAAGGCTCCCAGACACCAAGGTTTCCTCTGGAAGCTTCAAAGTTGTTGCTGTAGAAGAGATTGACCCGAAAAAGCAGACCGACCAAGATAGATGGAAGGGTCTTGCCTATGATATTTCAGATGATCAGCAAGACATAACAAGGGGGAAGGGTATGGTTGATTCCCTTTTCCAAGCTCCGGCCGATGCTGGTACTCACTATGCAGTCATGAACTCTTATGAGTACATTAGTACTGGCCTTAGAGAGTACAACTTGGACAACAACATGGACGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACACTGCCCAACATCAAGGCATGGAGTTCCTCTCATTCTTGGTGTCTGGGGAGGGAAAGGTCAAGGAAAATCTTTCCAATCCCTATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATAAGGCAAAGATACCGTGAAGCTGCAGATATAATAAGGAAGGGAAAGATGTGTGCCCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACACAGTATACTGTGAACAACCAGATGGTGAATGCTACACTCATGAACATCGCTGATAATCCAACAAATGTGCAGCTTCCTGGTATGTACAACAAGGAAGACAACCCGCGTGTGCCCATCATTGTCACTGGTAACGATTTCTCAACATTGTACGCTCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCTACCAGAGAAGATCGCATTGGTGTCTGCATAGGAATTTTCCGCAGTGACAATGTTCCTAAAGAGGATGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCAATCAGGTCCAGAGTATATGACGACGAAGTGAGGAAGTGGATTGGTACTGTTGGTGTTGACAGCATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAATCTTTGAGCAGCCCAAGATAACTTTGGAAAAGCTCTTAGAGTATGGTTTTTTGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTCCAACTTGCAGACAAGTACTTGAATGAGGCTGCCCTTGGTGATGCTAACCAAGATTCTATCAAGAGAGGATCTTTCTATGGCAAGGCAGCACAGCAAGTAAATGTCCCTGTTCCCGAAGGTTGTACTGATCCAAATGCGGAAAACTTCGACCCTACTGCTAGAAGTGATGATGGATCCTATGGGACTGAACTGATAATGGTAAACAACTGTAAAGAGAGCGTGTGGCCAGGAATCCTAGGCAGTGCAGGGCACCCATCACCAAAAGATGGTGGCTTCCACCTCTGCAGCGGCGAAGAGACGGTTGTGGAAGTCCCTGAAGGTTGGTCAGGTAGAATCTGGGGCAGACAAGGGTGTAGCTTTGACAACAAAACAGGGAAAGGGTCATGTGAAACAGGTGATTGTGGAGGTCTTTTAAAATGCCAAGGAATTGGTGGAGTACCACCAGCTACACTTGTTGAAATGACCCTTGGAACCCCTGAATCAGCATTTCATTTCTATGATGTTAGTTTGGTTGATGGGTTTAATCTCCCTGTGTCAATGAAGCCTGTGGGTGGTTGTGTAGGTTGTGGTGTTGCATCATGTGAGGCTAACTTGAATATTTATTGCCCTTCTGCACTTGTTGTTCAAAGGCAAGGGAAGGTGGTTGGGTGCAAGAGTGCTTGTTTGGCTAAAAAATCAGATAGGTATTGCTGTACTGGGGAGTATGCTAGTCCAAAAAGTTGCAAACCAAGTGAGTTTGCTCGTTTGTTTAAGACTAATTGCCCTCAGGCTTATAGCTATGCTTATGATGATTCAGAAGGGCTTAAGACTTGCAAAGCACCTAGTTATGTCATTACTTTTTGTCCTCCTAAATGA 2034 0.4538 MILQLSLNGSGAGASVPSSAFFGSNLKRVTSRLPDTKVSSGSFKVVAVEEIDPKKQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPADAGTHYAVMNSYEYISTGLREYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKAWSSSHSWCLGRERSRKIFPIPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVPKEDVVKIVDTFPGQSIDFFGAIRSRVYDDEVRKWIGTVGVDSIGKKLVNSKEGPPIFEQPKITLEKLLEYGFLLVQEQENVKRVQLADKYLNEAALGDANQDSIKRGSFYGKAAQQVNVPVPEGCTDPNAENFDPTARSDDGSYGTELIMVNNCKESVWPGILGSAGHPSPKDGGFHLCSGEETVVEVPEGWSGRIWGRQGCSFDNKTGKGSCETGDCGGLLKCQGIGGVPPATLVEMTLGTPESAFHFYDVSLVDGFNLPVSMKPVGGCVGCGVASCEANLNIYCPSALVVQRQGKVVGCKSACLAKKSDRYCCTGEYASPKSCKPSEFARLFKTNCPQAYSYAYDDSEGLKTCKAPSYVITFCPPK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0273 677 Pfam Thaumatin family 461 675 IPR001938 -
Lal6g0273 677 ProSiteProfiles Thaumatin family profile. 457 675 IPR001938 -
Lal6g0273 677 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 5 452 - -
Lal6g0273 677 PRINTS Pathogenesis-related protein signature 456 468 IPR001938 -
Lal6g0273 677 PRINTS Pathogenesis-related protein signature 504 515 IPR001938 -
Lal6g0273 677 PRINTS Pathogenesis-related protein signature 557 573 IPR001938 -
Lal6g0273 677 PRINTS Pathogenesis-related protein signature 665 674 IPR001938 -
Lal6g0273 677 Pfam ATPase family associated with various cellular activities (AAA) 170 287 IPR003959 GO:0005524|GO:0016887
Lal6g0273 677 PANTHER - 5 452 IPR044960 -
Lal6g0273 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 314 IPR027417 -
Lal6g0273 677 Gene3D - 164 290 IPR027417 -
Lal6g0273 677 CDD TLP-PA 456 674 - -
Lal6g0273 677 SMART tha2 457 675 IPR001938 -
Lal6g0273 677 Gene3D Thaumatin 456 675 IPR037176 -
Lal6g0273 677 ProSitePatterns Thaumatin family signature. 518 533 IPR017949 -
Lal6g0273 677 SUPERFAMILY Osmotin, thaumatin-like protein 457 676 IPR037176 -
Lal6g0273 677 Gene3D - 291 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0273 Lal-Chr6 1787125 1792141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0273 451 675 Receptor kinase-like Gene Family AT5G38280 42.241 1.70e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0273 - - gmx:100806240 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0273 6 1787125 1792141 Lal18g1336 18 15815051 15822641 ECH
Lal6g0273 6 1787125 1792141 Lal6g0273 6 1787125 1792141 ECH