Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0048 ATGCTGTGCATGAAAGGTTCCCGAAACGGTGTTGTCGTTGGTTCAGGATCGGTGCCAGTGTACCTCAACGTTTACGATCTCACACAAATCAACGTTTACGCTTATTGGTTTGGCCTTGGAGTTTATCATTCTGGCGTTCAAGTACATGGTGTTGAGTACGCGTTTGGAGCGCATGAGTACCCATCGACGGGGATATTCGAAGGAGAACCAAAGAGATGTGAAGGGTTCAGGTTTAGGAAGACTATACTGATTGGAAAGACTGATATGGGGCCTAGTGAAGTGAGGGGTGTGATGGAAGAACTTGCTGCTGAATATAGAGGGAATGCTTACAATTTGATTGCCAAAAACTGCAACCATTTCTGCAATGATGCCTGTGTTAAGCTCACTGGAAATCATATTCCTAGTTGGATAAATCGACTTGCTCGAATCGGTTTTTTGTGCAATTGTATTCTTCCTGTGGCATTGAACTCAACTAAAGTTAGACATCACAAAATAGAAGACAAACAAATGCAATGTAAAGGAGAGACTCAAGTATTAACCAATGAGTCCAACAAGGTCACTCCTTCAAATTCAATATCCTCTTCTACTTCTTCCCCGACTACTACTACTACCTTTGGTAGAGAACGTCGGGGAAGAAGTAGAACGAGACGACCCGTTCCACCATCTTCACCTTTCATGGTTGAGTCTTCTTCATCTTGA 699 0.4306 MLCMKGSRNGVVVGSGSVPVYLNVYDLTQINVYAYWFGLGVYHSGVQVHGVEYAFGAHEYPSTGIFEGEPKRCEGFRFRKTILIGKTDMGPSEVRGVMEELAAEYRGNAYNLIAKNCNHFCNDACVKLTGNHIPSWINRLARIGFLCNCILPVALNSTKVRHHKIEDKQMQCKGETQVLTNESNKVTPSNSISSSTSSPTTTTTFGRERRGRSRTRRPVPPSSPFMVESSSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0048 232 PANTHER DESUMOYLATING ISOPEPTIDASE 9 232 IPR008580 GO:0008233
Lal18g0048 232 PANTHER F23A5.4 PROTEIN 9 232 - -
Lal18g0048 232 Gene3D PPPDE domains 14 173 IPR042266 -
Lal18g0048 232 ProSiteProfiles PPPDE domain profile. 18 155 IPR008580 GO:0008233
Lal18g0048 232 Pfam PPPDE putative peptidase domain 19 152 IPR008580 GO:0008233
Lal18g0048 232 MobiDBLite consensus disorder prediction 176 206 - -
Lal18g0048 232 MobiDBLite consensus disorder prediction 176 232 - -
Lal18g0048 232 SMART DUF862_2a 18 156 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0048 Lal-Chr18 346655 349464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0048 K22763 - gmx:100796813 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1241 20 16939889 16942680 Lal18g0048 18 346655 349464 LSH
Lal1g1229 1 13565293 13567935 Lal18g0048 18 346655 349464 LSH