Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1559 ATGGGAACCTTTAGCTTCAAAAAAGCCTATGATGCTTTGAAGGACTCCACTAAGGTTGGCCTTGCTAAAGTCAATAGTGAATACAAGGGGTTGGATATTGCGATTGTAAAGGCTACCAATCATGTGGAATATCCTCCGAAAGAGCGCCATGTTCGAAAAATATTGCATGCAACATCAGCATATCAACCAAGAGCAGATGTAGCATACTGCATTCATAAACTTTCCAAGAGACTTACCAAAACGCGAAGTTGGATAGTTGCTGTAAAGACATTGATAGTAATACATAGGACATTGAGGGAGGGTGATCCTACCTTCAGGGAAGAGCTTCTAAACTACTCACAAAGGGGACATATTCTTCAAATATCCAATTTCAAAGATGACTCAAGCCCTTTAGCTTGGGATTGTTCTGCCTGGGTTCGAACCTACGCACTATTTTTAGAAGAACGACTTGAATGCTTTAGAATCCTTAAATATGACATCGAATCTGAGCATCTAACAAAATCATCACCAGCTGCTACTAAAGCACATAGCCGAACACGGTCGTTGGCCAATGGCGATTTGTTGGAGCAGCTACCTGCTCTACAACAACTTTTATACCGCCTCATTGGTTGTCAGCCTGAAGGATGTGCTTACGGCAATTTCGTAATACAATACGCATCAGCCCTGGTATTGAAAGAGAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTTGTGGACATGTTCTTTGATATGTCGAGACATGACGCGGTGAAGGCGCTAAATATTTATAAAAGAGCTGGCCAGCAGGCTGAAAATCTTGCCGACTACTACGAATACTGCAAAGGCTTGGACCTTGCTAGGAATTTCCAGTTTCCAACACTAAGACAGCCACCTCCATCTTTCCTTGCAACAATGGAAGAATACATTAAAGAAGCGCCCCAGACAGGCTCGGTTAATAAGAGACTGGAGTATAAGGAAAATGATCAATCAACTACTTTAGAAGAGTCATCTCCCAAAGAACCTGAAAAGCCTCAAGAAAAAGAGCTGCAAGTTGAAGAAGTCAAAGTAGCAGACGAAGAAAAACAGCCAAAAGAACTCGAGGTTGAGCCTCCTCCTTTGATATCAATCGACACGGATGATCTGCTGGGTCTGAATGAGATAAATCCAAAAGCTCTAGATTTGGAGGACAGGAATGCTTTGGCACTTGCAATTGTACCATCTGGTGGAAATAATCCAAGCAATCTTGCTTTGAGTAACATCGATGGGACAACCGGTTGGGAACTTGCCCTGGTTACAACACCAAGTAATCATACCAGCCAAGCGCCTGATCGAAAATTCGGTGGTGGTTTTGACAAGCTATTACTGGATAGTTTGTATGAAGATGACAGTGCTAGGAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGAGGAATTCCTATACAGAATAACCCATTTGATCAATATAATCATCATGATCCATTTGCAGTTTCCAACAACATAGCACCTCCACCAAATGTGCAAATGGCATTAATGTCTCATCAACAAATGATGTTTCAACAACAACAGCAACAGAATCCAATGATGTTTCAACAACATCAGCAACAGAATCCAATGATGTTTCAACAACATCAGCAACAGAATCCAATGATGTTCCAACAACCACAACACAACATGATGATGGTACCTCACCAACAACAACAATATACTCAATACCATCCTCAACATATGCAAATGCTGGGCACACATAATCCATTTGGAGATCCTTTACAAGTACCTAGCTATCATCATAGTTCCATGCCCCAACAAGGGAATTACAGTTTAATCTAG 1824 0.4123 MGTFSFKKAYDALKDSTKVGLAKVNSEYKGLDIAIVKATNHVEYPPKERHVRKILHATSAYQPRADVAYCIHKLSKRLTKTRSWIVAVKTLIVIHRTLREGDPTFREELLNYSQRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILKYDIESEHLTKSSPAATKAHSRTRSLANGDLLEQLPALQQLLYRLIGCQPEGCAYGNFVIQYASALVLKESFKIYCALNDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAENLADYYEYCKGLDLARNFQFPTLRQPPPSFLATMEEYIKEAPQTGSVNKRLEYKENDQSTTLEESSPKEPEKPQEKELQVEEVKVADEEKQPKELEVEPPPLISIDTDDLLGLNEINPKALDLEDRNALALAIVPSGGNNPSNLALSNIDGTTGWELALVTTPSNHTSQAPDRKFGGGFDKLLLDSLYEDDSARRQLQLQNAGYGHGGIPIQNNPFDQYNHHDPFAVSNNIAPPPNVQMALMSHQQMMFQQQQQQNPMMFQQHQQQNPMMFQQHQQQNPMMFQQPQHNMMMVPHQQQQYTQYHPQHMQMLGTHNPFGDPLQVPSYHHSSMPQQGNYSLI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1559 607 Pfam ANTH domain 31 308 IPR011417 GO:0005543
Lal17g1559 607 SUPERFAMILY ENTH/VHS domain 30 161 IPR008942 -
Lal17g1559 607 MobiDBLite consensus disorder prediction 318 363 - -
Lal17g1559 607 CDD ANTH_N 31 153 - -
Lal17g1559 607 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 533 - -
Lal17g1559 607 SUPERFAMILY GAT-like domain 177 308 - -
Lal17g1559 607 Gene3D - 3 160 IPR008942 -
Lal17g1559 607 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 533 IPR045192 GO:0048268|GO:0072583
Lal17g1559 607 SMART enth_2 29 160 IPR013809 -
Lal17g1559 607 Gene3D ANTH domain 173 325 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lal17g1559 607 ProSiteProfiles ENTH domain profile. 23 160 IPR013809 -
Lal17g1559 607 MobiDBLite consensus disorder prediction 313 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1559 Lal-Chr17 17046989 17052363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1559 K20044 - gmx:100783084 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1559 17 17046989 17052363 Lal17g1559 17 17046989 17052363 ECH
Lal17g1559 17 17046989 17052363 Lal4g1564 4 19832406 19834928 LSH
Lal7g1101 7 16994263 16998935 Lal17g1559 17 17046989 17052363 PCT
Lal17g1559 17 17046989 17052363 Lal7g1101 7 16994263 16998935 PCT