Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1525 ATGTCTAAGAAAGTTTTTGCCCTACAACGAGCCATGGATCATATCAATTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGACATTCCGTCACACAAAACAATGTACATGTGATGTCAACTGGTTCTTTTGCTGTTAATGTACCACCCGGAATCGGTGGCCTCCCAAAGGGCTTCAAACAAGGAACGTCTGGGATTTCTCAAAAGTTGAGCTTTTCAACTAAAGGTAGAAAGAAGTCTAAATCAGATGGAAGTGACTCTTGCGAAGAGAACATGTCGAAGAAGGATTTGGCCCTACAACAAGCCATGGATCAGATCACGTCTACATTTGGAAAGGGATCTATTATGTGGCTTGGACGTTCTGTTTCACCAAAAAATATACCCGTGGTGTCAACTGGCTCTTTTGCTCTTGATATAGCACTAGGAGTCGGTGGCCTTCCAAAGGGACGTGTCGTGGAAATATTTGGACCCGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAATTAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGGCACTTGCAGAGTCTATTGGAGTAAATACTAAAAACTTGTTACTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCACTCGATGTAATTGTTGTTGACAGCGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGGAAGTTGTGTCACTCCTTGTCACTTTCACAGTGTGTATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCCACTTTCGGCGGATTTGGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTTTACGCTTCCGTGCGGCTAAATATTAAAAGAATAGGACTTATCAAGAAAGGCGAAGAGACTTTAGGAAGCCAGGTTCAAGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATATGCAGAGACGCCGAGATTATAGAGTTGAGCTTAAAATACAAGCTCATCTCAAAACACGGTTCGTTTTATCAATATAATGGCCAGAATTTTCATGGTAAGGATGCTCTTAAGAAGTTTCTCGGTCAAGGCGACGGTGCACAAGAATTAACAATAAAACTCAGGGAAAAGCTTCTTAGTTCTGAGACAGAAATGGTGCCAAAGGCACAGGTGTTGTCAACAGTAGATGTGACGGAAAAAATGGTATCACTTTACTCCACAGACGAAGAAGCAGCTGCTGCGGTTGAAGCGTGA 1374 0.433 MSKKVFALQRAMDHINSAFGKGSIMWLGHSVTQNNVHVMSTGSFAVNVPPGIGGLPKGFKQGTSGISQKLSFSTKGRKKSKSDGSDSCEENMSKKDLALQQAMDQITSTFGKGSIMWLGRSVSPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKALAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCVLIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLIKKGEETLGSQVQVKVVKNKLAPPFKTAQFELEFGKGICRDAEIIELSLKYKLISKHGSFYQYNGQNFHGKDALKKFLGQGDGAQELTIKLREKLLSSETEMVPKAQVLSTVDVTEKMVSLYSTDEEAAAAVEA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1525 457 SUPERFAMILY RecA protein, C-terminal domain 365 410 IPR023400 -
Lal17g1525 457 PANTHER RECA 1 58 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PANTHER RECA 59 446 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 361 IPR027417 -
Lal17g1525 457 TIGRFAM tigrfam_recA: protein RecA 95 405 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 MobiDBLite consensus disorder prediction 57 93 - -
Lal17g1525 457 Pfam recA bacterial DNA recombination protein 7 58 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 Pfam recA bacterial DNA recombination protein 98 361 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 59 446 - -
Lal17g1525 457 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 58 - -
Lal17g1525 457 SMART AAA_5 148 322 IPR003593 -
Lal17g1525 457 ProSiteProfiles RecA family profile 2. 295 366 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal17g1525 457 CDD recA 94 420 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PRINTS RecA protein signature 184 213 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PRINTS RecA protein signature 256 285 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PRINTS RecA protein signature 304 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 PRINTS RecA protein signature 337 366 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 MobiDBLite consensus disorder prediction 76 93 - -
Lal17g1525 457 ProSiteProfiles RecA family profile 1. 126 285 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lal17g1525 457 ProSitePatterns recA signature. 307 315 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal17g1525 457 Hamap Protein RecA [recA]. 95 433 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal17g1525 457 Gene3D - 125 423 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1525 Lal-Chr17 16600746 16608723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1525 K03553 - gmx:100798983 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1525 17 16600746 16608723 Lal17g1525 17 16600746 16608723 ECH
Lal14g1674 14 16948328 16953864 Lal17g1525 17 16600746 16608723 PCT
Lal7g1072 7 16768490 16770464 Lal17g1525 17 16600746 16608723 PCT
Lal17g1525 17 16600746 16608723 Lal14g1674 14 16948328 16953864 PCT
Lal17g1525 17 16600746 16608723 Lal7g1072 7 16768490 16770464 PCT