Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1674 ATGTCGAGTCTTCTTCGCAACGCTTCCATTCTCAAACGTTCTCTTTTCCTCCCCCAGGGCTTTAAATTGGGAATATTGGGCACTTCGCACATTTTGAGCTATTCATCTAAAGGTAGAAAGCACTCCAAGTCTGATGGAAGTGACTCATGTGAAGAAAATATGTCTAAGAAAGATTTGGCTCTGCAACAAGCACTTGACCAGATCACTTCTGCATTTGGAAAAGGATCCATCATGTGGCTTGGTCGTTCTGTCTCAACAAAAAATGTACCCGTTGTGTCAACTGGTTCTTTTGCTCTTGATATAGCCCTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTAGAAATATATGGTCCAGAGGCTTCTGGGAAAACAACTCTGGCTTTACATGTGATTGCGGAGGCACAGAAACATGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCTCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAATACTGAGAACTTGCTTCTCTCACAACCAGATTGCGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCTATTGATGTAATTGTTGTTGACAGTGTAGCAGCTCTTGTTCCTAAAGGTGAGCTTGACGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAACTGAGCCACTCCTTGTCACTTTCCCAATCTGTATTGATTTTTATAAATCAGGTATCAGCTAAAGCTGTTGATTGCGCTGTTGTCAATTTTCCTTTTGCCAGACCTGGGAAATTTCTCATTTATTGGTTGAGTCAATTTTATGTTGATGAGAAGTTCCACTGTCATAATTCATATATTAAATATTTGCTGCGTGAGATTTTGTTCTGCCGCTGTCATCTGTTTGCCGTGAGGTCAAAGCTTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTATGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGGGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAACTCGCCCCTCCATTTAAAACTGCTCAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGAAGCAGAAATTATAGAGTTGAGCTTAAAATACAAACTCATCGTAAAGGCTGGCTCAATGTATTATTACGATGATCAGAGTTTCCGTGGTAAGGATGCTCTTAAGAATTTCCTGGCCGATAATCATAGCAAATTAGAAGAACTCGAAATGAAGCTCAGGGAGAAGCTCCTTAATGCCGATACAAAAAATGTACCAGAATCAGATGTGATCACCGGAGATGTTACAGAAGAAGTTGCAATACTAGATTCTACTGATGAAGAAGCCACAGCTGTTGTAGAAGCATGA 1434 0.4177 MSSLLRNASILKRSLFLPQGFKLGILGTSHILSYSSKGRKHSKSDGSDSCEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSTKNVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDKTLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSVLIFINQVSAKAVDCAVVNFPFARPGKFLIYWLSQFYVDEKFHCHNSYIKYLLREILFCRCHLFAVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAQFELEFGKGICREAEIIELSLKYKLIVKAGSMYYYDDQSFRGKDALKNFLADNHSKLEELEMKLREKLLNADTKNVPESDVITGDVTEEVAILDSTDEEATAVVEA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1674 477 Hamap Protein RecA [recA]. 57 442 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 ProSiteProfiles RecA family profile 2. 315 386 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal14g1674 477 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lal14g1674 477 SUPERFAMILY RecA protein, C-terminal domain 383 438 IPR023400 -
Lal14g1674 477 ProSitePatterns recA signature. 327 335 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lal14g1674 477 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 253 - -
Lal14g1674 477 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 300 466 - -
Lal14g1674 477 PANTHER RECA 300 466 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PANTHER RECA 1 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 SMART AAA_5 110 263 IPR003593 -
Lal14g1674 477 Gene3D - 382 440 - -
Lal14g1674 477 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PRINTS RecA protein signature 324 352 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PRINTS RecA protein signature 357 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 PRINTS RecA protein signature 410 427 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 Gene3D - 86 273 IPR027417 -
Lal14g1674 477 Gene3D - 297 381 IPR027417 -
Lal14g1674 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 381 IPR027417 -
Lal14g1674 477 Pfam recA bacterial DNA recombination protein 60 250 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lal14g1674 477 Pfam recA bacterial DNA recombination protein 314 381 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1674 Lal-Chr14 16948328 16953864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1674 K03553 - ini:109168938 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1674 14 16948328 16953864 Lal14g1674 14 16948328 16953864 ECH
Lal14g1674 14 16948328 16953864 Lal7g1072 7 16768490 16770464 LSH
Lal14g1674 14 16948328 16953864 Lal17g1525 17 16600746 16608723 PCT
Lal17g1525 17 16600746 16608723 Lal14g1674 14 16948328 16953864 PCT