LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g1510	ATGATGTTTGCAAAATCTGAAGCTAGTGAGAAGAGTGGTGCTGGTAATCAGAAAAAGTTGGTGAAAGATGTTGAAACTATAAACAAAGTTATGTACTTGGATAGAAATTCTTCAAAAAATCCAACATCTAGTGCAATTTCTCGATCTAAATCCACTTGGAAACCCCATTCACCTGAACCCAAATCAAGGCTCAAAGGTAGTACTACTACTAGTAGCAGTAGTAGTAGAAGAAGTAATGATGATGATAATTTGCAGAAGGATAAGAAATCCATATGGAATTGGAGGCCATTGAAGGCCCTTTCACATGTCCGAAATAAGAGGTTCAATTGTAGTTTTTACCTTCAAGTCCATTTGATTGAAGGGTTACCTTCCAATTTTGATGATGTTAGCCTTAGTGTGTCTTGGAAGAGGCGTGACGGTGTTTTGGTGACTCGTCCAGCCAAGGTAGTTCAAGGTGTGGCTGAATTTGAAGAGAAGCTGTCTTACACTTGCTCGGTGTATGGCAGTAGGAGTGGACCTCACCATTCGGCGAAGTACGAAGCAAAGCATTTTTTGCTCTATGCTTCTCTAGTCACTGCACCGGAGCTTGATTTGGGGAAGCACCGGGTTGACCTTACGAGGTTGCTTCCTCTTACGCTGGAGGAGCTTGAAGAGGAGAAGAGCTCAGGGAAATGGACTACAAGTTTTAGATTGTCAGGAATGGCTAAGGGCGGTGTAATGAATGTCAGTTTTGAGTATATGGTGGTTGGTGATAACAATAGTGCTACCAGAGACAGCCATAAAGCTCCTAATGTTTTGACTTCTAGGCAGAGTAGTATGCCTTTAACGAAACCAGATGTTAAACCGAAACAGTTTGATGGAAGCAGCAACATGAGGCGTGCTAGAAGTTTGTCAACCAAACAGTTTGATGAGGTAAAGGATCTTTGTGAGGTACTGCCAGTTTCAAAGTCAGCACTAGCCAGCTCAATAGACACCTTATACCAGAAATTTGATGAAGAAAAGGCATGTAGTCCTTCACACAATAAACCTGAACTTGATGTGTTTACAGAAAATCTTGACCCGATCAAACCAGATGCTTGTGCTTCATCTGATCTTCAGGAAGAAAAGCCTGAAGAGCATGTGGGCGATGATGAAAATACATGTCCAGCGCATGACAAACATGAAGTGGATGTGTTTCAAGAAAAACTGGAGATGGTTAAACCAGATGGCTATCCTTTACCTGATTCCGGCAAAGAAAACCCTGAAGATTGTCAAGGTGGTGATTTTTTTGTTATTGATAAGGGCATAGAATTGTCGCTAGATGAACCTGTTAAACTAGAGGAATCCATCATAAAGGCTCCTGAACATGCTTCTACAGTATATAGTACCCATACCCTTGATACTGCAGGGATACAAGTATCTTCTATAGATAGTGTTAAACATGATTCCCTGGATGAGGTAAACGGTAGTAGTTCTAAGGATCAGGCTGCGGCACCTGAATTTTCTTGTCAAGAGGATGACTTATACACGGAAGAGCTGCTCCTGCAAGAGTTTGAATCAGCTTTAAATAGAGTCTCAGATTTGAAGACAGTGGCATGGGAATCTCCTAAAATCATGGAAGCCAAATCTGAATATGATATGAGAAAGTCACATAGCTTTGATGATGTTACAGAGTTAGTTACCAGTGAATTTTTAAGCATGCTAGGCGTAGGTCACGGTCAAATAGGATTGAGTTCTGAAAGCGAGCCCGAGTCTCCAAGAGAGATCCTTTTAAGACAATTCGAGAAGGAGGCTCAAGATGGGGGCTTTTCTTTATTTGGTTTTGACATGGAGTATGGTCATGAAGAAGATGTCGGGGATGATGTTTCTATTGAATCAGAGAAGTGGAACTCCTTTGAGGGTATTAAGTCATCATCGTTGTTGCAATCTATGCAGGAGGAGCATGTAGTTGAGTCTCATGATGTCAAGGGCAAACAGAGGGCTCAAATGCTAGAAGACTTGGAAACAGAAGCGTTAATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCATCATTCTCCACCAAAAGACTGCTCCGGTTTTGGAAGTCCAATTCCATTACCCCCCGAAGACCCTCCTACGTTGCCTCCTCTGGCTGACGGGCTGGGCCCTTTTCTTCAGACAAAAGATGGGGGTTTTCTACGGTCTATGGATCCTTCAATTTTCAGTAATTCTAAAAGTGGCGGAAGCTTAGTCATGCAGGTTTCCAACCCTGTTGTGATGCCTGCAGAAATGGGTTCTGGAGTAATGGACATTTTGCAGTGTTTGGCTTCAGTGGGAATTGAGAAGCTCTCAATGCAGGCGAAGGAGTTAATGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCAATGCCTTCCTTAGAGGGAACTGAAAGGCAGTGTAATTTGCAGAATGGTTCAATTACAGGGCTAGATACTACTTGTGTGCAAAGGGAGTTGAAAGGAACACCACCTGGACTAAAGCCTAATAAGATTAGTTCAAGTTCAGTGAGAAACCAGACAGGTTCCGACTCAGAGTTTGTTTCATTGGAAGATCTTGCTCCATTGGCTATGAATAAAATTGAAGCACTTTCGGTGGAGGGTTTGAGAATACAATCTGGGATGTCAGAGGAGGATGCACCGTCAAACATTGTCGCTCAGTCGATTGGGGATATTTCAGCTCTCAAGGGTAAGGGGGTTGATGTTAGTGGATCCCTTGGCCTGGAAGGAGCTGCTGGCTTGCAGTTGTTGGATGTCAAAGACGGCAGTAATAACGGAGTTGATGGGATCATAGGCCTATCATTAACTCTTGATGAGTGGATGAGGCTGGATGCAGGTGAGATCGATGACATGGATAATATCAGTGAGCATACTTCCAAAGTTCTTGCAGCCCATCATGCTAACTCGTTTGACTATTTACGCGGGAGTTCAAGGGGGAAACGGGGGAAGGGTAGAAAGTGTGGTTTGCTCGGAAACAATTTCACAGTAGCATTAATAGTTCAACTTCGTGATCCACTGAGAAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGTGTTTGTCCCACCAAAGCCAAAAATTTTCTGCAATGTGTCCGAGTTAAGGAACAATAAAGACGAGGATGATGAGAGCAAAGTAGTAGCAGCAGCGAAGGTGGAGATAAAGGAGAACAATAAAGAAGATAAAAGCTCTGAACAGGAGGGGATTCCTCAATTCAAAATCACTGAAGTTCATGTTGCAGGTCTGAAGACTGAGCCTCAAAAGAAGAAGCTTTGGGGAGGTTCAAGCCAGCAACAGTCTGGGTCCCGCTGGTTGCTAGCTAATGGAATGGGGAAGAACAGCAAACGTCCCGTGATGAAGTCAAAGATTGCGGCTAAATCTAGTGCTCCGGTTACCACAAAGGTGCAGCCCGGTGACACCTTGTGGAGCATCTCGTCTCGAATTTATGGTACAGGAGCAAAATGGAAGCAATTGTCCACAATGAATCCACATATAAGAAACCCCAATGTCATTATACCGGATGAAACTGTAAGACTTAGTTGA	3576	0.4329	MMFAKSEASEKSGAGNQKKLVKDVETINKVMYLDRNSSKNPTSSAISRSKSTWKPHSPEPKSRLKGSTTTSSSSSRRSNDDDNLQKDKKSIWNWRPLKALSHVRNKRFNCSFYLQVHLIEGLPSNFDDVSLSVSWKRRDGVLVTRPAKVVQGVAEFEEKLSYTCSVYGSRSGPHHSAKYEAKHFLLYASLVTAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGMAKGGVMNVSFEYMVVGDNNSATRDSHKAPNVLTSRQSSMPLTKPDVKPKQFDGSSNMRRARSLSTKQFDEVKDLCEVLPVSKSALASSIDTLYQKFDEEKACSPSHNKPELDVFTENLDPIKPDACASSDLQEEKPEEHVGDDENTCPAHDKHEVDVFQEKLEMVKPDGYPLPDSGKENPEDCQGGDFFVIDKGIELSLDEPVKLEESIIKAPEHASTVYSTHTLDTAGIQVSSIDSVKHDSLDEVNGSSSKDQAAAPEFSCQEDDLYTEELLLQEFESALNRVSDLKTVAWESPKIMEAKSEYDMRKSHSFDDVTELVTSEFLSMLGVGHGQIGLSSESEPESPREILLRQFEKEAQDGGFSLFGFDMEYGHEEDVGDDVSIESEKWNSFEGIKSSSLLQSMQEEHVVESHDVKGKQRAQMLEDLETEALMREWGLNEKAFHHSPPKDCSGFGSPIPLPPEDPPTLPPLADGLGPFLQTKDGGFLRSMDPSIFSNSKSGGSLVMQVSNPVVMPAEMGSGVMDILQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPSLEGTERQCNLQNGSITGLDTTCVQRELKGTPPGLKPNKISSSSVRNQTGSDSEFVSLEDLAPLAMNKIEALSVEGLRIQSGMSEEDAPSNIVAQSIGDISALKGKGVDVSGSLGLEGAAGLQLLDVKDGSNNGVDGIIGLSLTLDEWMRLDAGEIDDMDNISEHTSKVLAAHHANSFDYLRGSSRGKRGKGRKCGLLGNNFTVALIVQLRDPLRNYEPVGTPMLALIQVERVFVPPKPKIFCNVSELRNNKDEDDESKVVAAAKVEIKENNKEDKSSEQEGIPQFKITEVHVAGLKTEPQKKKLWGGSSQQQSGSRWLLANGMGKNSKRPVMKSKIAAKSSAPVTTKVQPGDTLWSISSRIYGTGAKWKQLSTMNPHIRNPNVIIPDETVRLS	1191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g1510	1191	SUPERFAMILY	LysM domain	1142	1190	IPR036779	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	833	847	-	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	827	847	-	-
	Lal17g1510	1191	Pfam	LysM domain	1145	1188	IPR018392	-
	Lal17g1510	1191	CDD	LysM	1145	1190	IPR018392	-
	Lal17g1510	1191	SMART	LysM_2	1143	1191	IPR018392	-
	Lal17g1510	1191	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	105	244	IPR019448	-
	Lal17g1510	1191	ProSiteProfiles	C2 NT-type domain profile.	100	248	IPR019448	-
	Lal17g1510	1191	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	2	1190	-	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	62	78	-	-
	Lal17g1510	1191	Gene3D	LysM domain	1134	1191	IPR036779	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	269	296	-	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	1	85	-	-
	Lal17g1510	1191	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	2	1190	IPR039614	-
	Lal17g1510	1191	MobiDBLite	consensus disorder prediction	31	53	-	-
	Lal17g1510	1191	ProSiteProfiles	LysM domain profile.	1142	1190	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g1510	Lal-Chr17	16470702	16475498	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g1510	-		-	mtr:MTR_2g040970	1613.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g1510	17	16470702	16475498	Lal17g1510	17	16470702	16475498	ECH
	Lal17g1510	17	16470702	16475498	Lal4g1533	4	19430110	19434861	LSH
	Lal19g1204	19	15441801	15449939	Lal17g1510	17	16470702	16475498	PCT
	Lal17g1510	17	16470702	16475498	Lal19g1204	19	15441801	15449939	PCT