Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0913 ATGAAATTATTAACACAAAGAGAATCTGCAAAGAGAATTCTCAGAACGACGTCGTCGTCGTCGTCATCGGTGGCTAGGGTTCTGGGGCGTGTGTACCACGAGAGGGTGGTTGATCACTACAACAACCCTCGGAATGTGGGATCATTCGATAAGAACGATCCGACCGTAGGAACTGGTCTAGTCGGTGCACCCGCGTGTGGTGACGTCATGAAGCTTCAGATTAAGGTTGATCATCAAACCGGAAAGATCGTTGATGCTCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCTCTCGCTACTGAATGGGTGAAGGGGAAGCAAATGGAGGAAGTTTTATCCATTAAGAATAATGAAATTGCCAAGCATCTTTCACTTCCCCCAGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTATCTCAACAACTACTAGCGGAAAGGCAACAACTGGAGAGAAAGCAGCCACTACTTGA 522 0.4674 MKLLTQRESAKRILRTTSSSSSSVARVLGRVYHERVVDHYNNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDHQTGKIVDARFKTFGCGSAIASSSLATEWVKGKQMEEVLSIKNNEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRISTTTSGKATTGEKAATT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0913 173 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 19 121 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lal17g0913 173 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 121 169 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lal17g0913 173 SUPERFAMILY SufE/NifU 31 156 - -
Lal17g0913 173 Gene3D - 31 172 - -
Lal17g0913 173 TIGRFAM iscU: FeS cluster assembly scaffold IscU 32 155 IPR011339 GO:0005506|GO:0016226|GO:0051536
Lal17g0913 173 CDD IscU_like 32 147 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lal17g0913 173 PANTHER IRON-SULFUR CLUSTER ASSEMBLY PROTEIN 19 121 - -
Lal17g0913 173 PANTHER IRON-SULFUR CLUSTER ASSEMBLY PROTEIN 121 169 - -
Lal17g0913 173 Pfam NifU-like N terminal domain 32 155 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0913 Lal-Chr17 7065986 7068285 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0913 K22068 - gmx:100806169 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1515 14 15987137 15989057 Lal17g0913 17 7065986 7068285 PCT
Lal7g0919 7 15638327 15640388 Lal17g0913 17 7065986 7068285 PCT
Lal19g1077 19 14489845 14492021 Lal17g0913 17 7065986 7068285 PCT
Lal17g0913 17 7065986 7068285 Lal14g1515 14 15987137 15989057 PCT
Lal17g0913 17 7065986 7068285 Lal7g0919 7 15638327 15640388 PCT
Lal17g0913 17 7065986 7068285 Lal19g1077 19 14489845 14492021 PCT