Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0891 ATGGATCCAAACCGAGTCATGTCCCGTCTCCCTTCCTTACCAGTCAGTACCATTGCCGATTCCGACCAATTCGACATCGAACAGCCACACACTTCTCCACCGTCCGATCCCTCATCATCACGTTTCCAATTTCCCAACCTCACCGACCCCCAACTCCTGGCGTCCATTACCCAAGCAATCTCCGAGGTCTCGCAAGCACGATCCGTCCTCAGTCTGCTTGGCCCGCGCCCTATCCACGAAGACGTGGATAAGGCCCGGGCCAAGCTGGCTGACATCGAATTCAAGCTGTCGAAACAGCTTGACGAGATCGTACTGCTGCCCGGGCCCGCCGAGATAGAAGTAGATGATTGGCGGGCCCGGATGGACGAGAAGGAGAGGGAGCACTGGGAATCGGTTGAGGAAGAGAAACAGGTTTATAAGTCGGTTGTGCAACTTGATGAAATGCATGATGCGTATGAAAAGCTTCTTAGTGATGCTGAGAAGCGGTTGGTGAAGATTTATGAGTCTGCTGATGGTGGTGGTGATGATGATGATGTCGAGGTGGATGAAGCGGTTGTGGAGATACTTCAAGAGGCACATGGGAAGAGAATCGAAAGAGTGGTTCTTTCGGGCCGGGGATTGAGGTTGCTGCCTGAGGCGTTTGGCTGGATTCCGGGCTTGGTGCTGCTTGATGTCTCCAGCAATCAGCTTTCAGCAATCCCTGATTCAATAGCTGGATTGGAAAATCTTGAGGAGCTCAATCTCTCTTCAAATCTTTTGGAATCACTGCCAGATTCAATTGGGTTGTTACAAAAGTTGAAATTCCTTAATGTCTCTGCAAACAAGCTGAATGCCCTTCCCGATTCCATCTGTCAGTGCAGGTCATTGGTGGTGCTGGATGCAAGCTTTAACAATCTGTCATATTTGCCAACAAACATTGGATATGAATTACCAAATTTAGAAAGGCTCATGATTCAATTGAACAAGATTCGATCTCTTCCCTCATCTGTTTGTGAGATGAAATCGTTGCGCTATCTGGATGCTCATGTCAATGAGCTACATGGGCTTCCTATTGCAATTGGGAGACTGACTACTCTTGAAGTTCTCAACCTCAGCAGTAACTTCAGTGACCTTAAAGAACTACCAGAAACATTTGGCGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCCGATACATTTGGTCGCCTTGATAATTTGAAAAGGCTAAACTTGGAGCACAATCCTCTTGAATTGCCACCACTGGAGATTGTAAATCTAGGGGTCGAGGCCATTAAGACTTTTATGGCGAAGAGGTGGATTGATATATTGGCCGAGGAAGAACGGAAAAGCAGTCAAGAAATGCAAGAACAAGAACAGAGTAGCTGGCTAACACGAAGCACTTTGTGGTTGAAGAGGTATTTTGGTTCGCCTAAGTCTTCATCCAAACCTCCAACCGACGCTTTTCTTGATCAGCAGCTATGA 1485 0.4727 MDPNRVMSRLPSLPVSTIADSDQFDIEQPHTSPPSDPSSSRFQFPNLTDPQLLASITQAISEVSQARSVLSLLGPRPIHEDVDKARAKLADIEFKLSKQLDEIVLLPGPAEIEVDDWRARMDEKEREHWESVEEEKQVYKSVVQLDEMHDAYEKLLSDAEKRLVKIYESADGGGDDDDVEVDEAVVEILQEAHGKRIERVVLSGRGLRLLPEAFGWIPGLVLLDVSSNQLSAIPDSIAGLENLEELNLSSNLLESLPDSIGLLQKLKFLNVSANKLNALPDSICQCRSLVVLDASFNNLSYLPTNIGYELPNLERLMIQLNKIRSLPSSVCEMKSLRYLDAHVNELHGLPIAIGRLTTLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLKRLNLEHNPLELPPLEIVNLGVEAIKTFMAKRWIDILAEEERKSSQEMQEQEQSSWLTRSTLWLKRYFGSPKSSSKPPTDAFLDQQL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0891 494 SUPERFAMILY L domain-like 193 424 - -
Lal17g0891 494 ProSiteProfiles Leucine-rich repeat profile. 242 263 IPR001611 GO:0005515
Lal17g0891 494 Coils Coil 142 162 - -
Lal17g0891 494 SMART LRR_typ_2 381 403 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 240 262 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 356 380 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 310 333 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 287 309 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 217 239 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 404 427 IPR003591 -
Lal17g0891 494 SMART LRR_typ_2 263 286 IPR003591 -
Lal17g0891 494 PANTHER LEUCINE-RICH REPEAT-CONTAINING 35 475 - -
Lal17g0891 494 Gene3D Ribonuclease Inhibitor 308 470 IPR032675 -
Lal17g0891 494 Coils Coil 441 461 - -
Lal17g0891 494 Gene3D Ribonuclease Inhibitor 122 301 IPR032675 -
Lal17g0891 494 ProSiteProfiles Leucine-rich repeat profile. 383 404 IPR001611 GO:0005515
Lal17g0891 494 Pfam Leucine rich repeat 218 276 IPR001611 GO:0005515
Lal17g0891 494 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Lal17g0891 494 Coils Coil 82 102 - -
Lal17g0891 494 MobiDBLite consensus disorder prediction 10 44 - -
Lal17g0891 494 MobiDBLite consensus disorder prediction 1 44 - -
Lal17g0891 494 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 3 35 475 - -
Lal17g0891 494 SMART LRR_bac_2 240 259 - -
Lal17g0891 494 SMART LRR_bac_2 263 282 - -
Lal17g0891 494 SMART LRR_bac_2 381 400 - -
Lal17g0891 494 SMART LRR_bac_2 217 236 - -
Lal17g0891 494 SMART LRR_bac_2 356 377 - -
Lal17g0891 494 SMART LRR_bac_2 286 305 - -
Lal17g0891 494 SMART LRR_bac_2 310 329 - -
Lal17g0891 494 PRINTS Leucine-rich repeat signature 220 233 - -
Lal17g0891 494 PRINTS Leucine-rich repeat signature 381 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0891 Lal-Chr17 6872474 6877692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0891 228 420 Receptor kinase-like Gene Family AT5G25910 30.622 1.05e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0891 - - gmx:100803823 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0891 17 6872474 6877692 Lal17g0891 17 6872474 6877692 ECH
Lal17g0891 17 6872474 6877692 Lal21g0746 21 6123518 6132974 LSH
Lal7g0904 7 15534037 15539289 Lal17g0891 17 6872474 6877692 PCT
Lal17g0891 17 6872474 6877692 Lal7g0904 7 15534037 15539289 PCT