Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0812 ATGTCCAAAGAAGAAGAAGTGGTTGTAGATGAAGCATCATTATTGAAAGACAGCACTAAAGAGGAACTCACCAAAATCCATCTCATGAGAGACTTTGTTCAAAAACGTGATCCCTCTTCTAAGGAAGTAGATGTTTTGACGCTCAGAAGATTCTTGCGCGCTCGTGATTTGGATGTAGAGAAAGGTTCCGCGATGTTCCTCAAGTACATTACTTGGAGACGTTCGTTTGTGCCAAATGGTTTTATATCTCCTTCAGAGATTCCTGATGAACTTGCACAGGGGAAGATGTTTGTGCAAGGACTCGATAAGATCGGTCGACCTGTAACTGTTGCCTTCGCTGCAAAACATTTTCAAAGCAAAGATGGTCCAGATACTTTCAAACGTACGTTTTTTTCAGCTCAGATCGGGTTTGTAGTTTTTGCTCTTGATAAACTATGTTCAAGGATGCCACCTGGGCAAGAAAAGTTTCTTGCTATAGCCGATATTAAGGGATGGGGATATGCGAACAGCGACATTCGCGGCTACCTTAATGCTCTTACTATTTTGCAGGATTACCACCCAGAAAGATTAGGGAAATTGTTTATTGTTCATGCACCTTACATGTTTATGAAAGTATGGAATGTTATATACCCTTTCATTGACAAAAATACCAAGAAAAAGATAGTATTTGTGGAAAACAAAAAGCTGAAAGAAACACTGCTAGAAGACATAGATGAGAGTCAGATACCAGAAATATATGGAGGCAAAATGCCATTAGTCCCTCTCCAAGATTGA 774 0.3979 MSKEEEVVVDEASLLKDSTKEELTKIHLMRDFVQKRDPSSKEVDVLTLRRFLRARDLDVEKGSAMFLKYITWRRSFVPNGFISPSEIPDELAQGKMFVQGLDKIGRPVTVAFAAKHFQSKDGPDTFKRTFFSAQIGFVVFALDKLCSRMPPGQEKFLAIADIKGWGYANSDIRGYLNALTILQDYHPERLGKLFIVHAPYMFMKVWNVIYPFIDKNTKKKIVFVENKKLKETLLEDIDESQIPEIYGGKMPLVPLQD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0812 257 SUPERFAMILY CRAL/TRIO N-terminal domain 15 80 IPR036273 -
Lal17g0812 257 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 254 IPR001251 -
Lal17g0812 257 CDD SEC14 97 249 IPR001251 -
Lal17g0812 257 Pfam CRAL/TRIO domain 93 248 IPR001251 -
Lal17g0812 257 Gene3D - 2 254 IPR036865 -
Lal17g0812 257 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 9 257 - -
Lal17g0812 257 SMART sec14_4 90 251 IPR001251 -
Lal17g0812 257 SUPERFAMILY CRAL/TRIO domain 85 251 IPR036865 -
Lal17g0812 257 SMART CRAL_TRIO_N_2 44 69 IPR011074 -
Lal17g0812 257 PANTHER OS03G0850700 PROTEIN 9 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0812 Lal-Chr17 5938637 5941059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0812 47 244 Acyl Lipid Metabolism Gene Families AT1G55840 25.926 4.37e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0812 - - gmx:100797666 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1419 14 15439558 15441912 Lal17g0812 17 5938637 5941059 ECH
Lal17g0812 17 5938637 5941059 Lal17g0812 17 5938637 5941059 ECH
Lal17g0812 17 5938637 5941059 Lal4g0678 4 5292051 5293426 LSH
Lal14g1419 14 15439558 15441912 Lal17g0812 17 5938637 5941059 PCT
Lal17g0812 17 5938637 5941059 Lal14g1419 14 15439558 15441912 PCT