Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0483 ATGCCACCTTCTCCTTCAGAAAACCGAAGCAGATGGAGGAAGCGGAAGAGAGACTCCCAAATCGGTCGCCGGCAACAGAAGCGCCACCACGAAGAGGAAGAAGACGACGAAGAGGAAAACCCTAATGCCACCGCTGAAGAGGATCACGATGACGACTCTGAGGACCAATTGCACCACCCTAACCCTCAATCAGCCGCTAATTCCCAACCGCACCACGAGATCGAGGTCCTCTCTGACCATGTGGTCCAGATTTCGCAGTTCCCCGTTGTTTTCAAGCGTTCAGTCAACCGCCCCCACTCCTCCGTCGCCGCAATCGTGGCTGTCGAGCGAGCTAACGACTGTGGCAACAACAATAACTGTCAGCACAAGAACCCTCCAGTTCTAGAGAATGTGTCTCACGGCCAGCTCCAGGCGCTATCTACTGTGCCTGCTGATAGTGCCGCCTTCGATCAGGACTGTGGCGGTGATGGAAGTAATTCGAGCTTTGTCATCACTCCTCCCCCAGTTTTGGAAGGCCGTGGTGTTGTGAAACGCTTTGGGAATAGGGTTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCACCTGCTTCGGTGCATAGACTAGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAATCGCCAGATCATACTCCAGAGAAGTACATGGAGTTTAGGAACCATATTGTTGCACTATACATGGAGGATCCGGGGAAGAGGATTATGGTATCCAATTGCCAGGGATTGTTACTTGGGGTTGATAGTGAAGATTTAACAAGAATTTTCAGGTTCCTTGATCACTGGGGAATTATTAATTACTGTGCTCGGGTGCTTTCTCATGAGCCTTGGAATGATATGTCCTGCCTGAAGGAGGACCCAAGTGGAGAGGTTCGAGTGCCATCAGATTTTTTAAAATCCATTGATAGTTTGGTCAAATTTGACAAGCCTAAGTGTAAGCTCAGAGCAGATGAAATTTATTCATCACCGAAAACTCAGAATCCAGATGTCTCTGACCTCGATGACAGAATAAGAGAGCATCTATCTGAAAATCATTGCAATTATTGTTCTCGTCCTCTTCCTGTTGTATACTATCAGTCACAAAAAGAGGTTGATATTTTACTTTGCACTGATTGCTTTCATGATGGAAGATTTGTCATTGGTCATTCCAGTCTAGATTTTATAAGGGTGGATTCAACAAGGGATTATAGTGAGCTAGATGGGGATAGTTGGAGTGATCAAGAAACTTTGATGCTTCTAGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTGCCCATGGAAGATGGAAAATTGGAAAGTATCAATGTTCCAAGCATGCCTTTGTCTAATGTGATGAATAAAGATGATAGTGAAAGATTGCATCATTGCTTAAACGGAGATTCTGCAGGACCTTTTCATCAGAGCAGTAACTTTGACGGCAGGCTTCCTTTTGCTAATTCTGGAAATCCTATTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCACTGGGAGTACTGTCTGAGGAAAATTCCGGGAGCACATCACAGATGGAAGCACCAGTACATGATAATAGGACAAATTTGGAAAGCACACATAGTAGAGATGGAGGCCCTCGTGGAGAAATGGCAAATTCAAATAATCATAATGAGGATAAGGCTAAACTTGGCTCAAGGGGTCAAAATGAGGGTGGGATAACACCATTATCTATGGAGAAAGTTAAAGATGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAACAAAAGCCAAATTGTTTGCTGATCATGAAGAACGAGAAATCCAGAGGCTATGTGCTAATATCGTTAATCATCAGTTGAAAAGGTTGGAATTGAAGCTGAAGCAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAAAGCGAACAGGTCGAGAGGACGAGGCAGAGGTTTGCAGCAGAACGGTCCCGTGTTATATCAGCACGTCTTGGAACTGGGGGAGCAGCACCTTTGATGAATGCATCAGGTGTCGGTTCTTCCATGGCTAACAGTAATGGCAACATTAGGCAACAGATGATCTCTGCATCTCCCTCACAACCCAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCTCACATGTCCTTTGGCCCACGACCTTCAATGTTTGGGTTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAATCTGCTTTTTCAAATGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTTCAAATCATCCTTTGTTGAGGCCTGTGTCAGGGACTAACTCTGGTTTGGGTTAA 2391 0.4529 MPPSPSENRSRWRKRKRDSQIGRRQQKRHHEEEEDDEEENPNATAEEDHDDDSEDQLHHPNPQSAANSQPHHEIEVLSDHVVQISQFPVVFKRSVNRPHSSVAAIVAVERANDCGNNNNCQHKNPPVLENVSHGQLQALSTVPADSAAFDQDCGGDGSNSSFVITPPPVLEGRGVVKRFGNRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMEFRNHIVALYMEDPGKRIMVSNCQGLLLGVDSEDLTRIFRFLDHWGIINYCARVLSHEPWNDMSCLKEDPSGEVRVPSDFLKSIDSLVKFDKPKCKLRADEIYSSPKTQNPDVSDLDDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSLDFIRVDSTRDYSELDGDSWSDQETLMLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLESINVPSMPLSNVMNKDDSERLHHCLNGDSAGPFHQSSNFDGRLPFANSGNPIMALVAFLASAVGPRVAASCAHAALGVLSEENSGSTSQMEAPVHDNRTNLESTHSRDGGPRGEMANSNNHNEDKAKLGSRGQNEGGITPLSMEKVKDAAKAGLSAAATKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKESEQVERTRQRFAAERSRVISARLGTGGAAPLMNASGVGSSMANSNGNIRQQMISASPSQPSISGYGNNQPVHPHMSFGPRPSMFGLGQRLPLSMIQQSQSAFSNAMFNAPSNVQPTSNHPLLRPVSGTNSGLG 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0483 796 Coils Coil 624 644 - -
Lal17g0483 796 CDD SANT 409 451 IPR001005 -
Lal17g0483 796 Pfam Myb-like DNA-binding domain 409 451 IPR001005 -
Lal17g0483 796 ProSiteProfiles Myb-like domain profile. 402 452 IPR001005 -
Lal17g0483 796 MobiDBLite consensus disorder prediction 771 796 - -
Lal17g0483 796 SMART sant 406 454 IPR001005 -
Lal17g0483 796 MobiDBLite consensus disorder prediction 35 51 - -
Lal17g0483 796 SUPERFAMILY Homeodomain-like 407 459 IPR009057 -
Lal17g0483 796 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 64 795 - -
Lal17g0483 796 ProSiteProfiles SWIRM domain profile. 184 282 IPR007526 GO:0005515
Lal17g0483 796 ProSiteProfiles Zinc finger ZZ-type profile. 347 401 IPR000433 GO:0008270
Lal17g0483 796 ProSiteProfiles SANT domain profile. 405 456 IPR017884 -
Lal17g0483 796 PANTHER SWI/SNF COMPLEX-RELATED 64 795 - -
Lal17g0483 796 Gene3D - 406 456 - -
Lal17g0483 796 MobiDBLite consensus disorder prediction 540 556 - -
Lal17g0483 796 Pfam SWIRM domain 187 273 IPR007526 GO:0005515
Lal17g0483 796 MobiDBLite consensus disorder prediction 540 598 - -
Lal17g0483 796 SUPERFAMILY Homeodomain-like 183 276 IPR009057 -
Lal17g0483 796 MobiDBLite consensus disorder prediction 1 71 - -
Lal17g0483 796 Gene3D - 190 277 IPR036388 -
Lal17g0483 796 Pfam SWIRM-associated region 1 611 686 IPR032451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0483 Lal-Chr17 3331953 3338726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0483 352 489 EF-hand Containing Proteins AT3G07740 31.293 3.15e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0483 K11649 - gmx:100780440 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0483 17 3331953 3338726 Lal17g0483 17 3331953 3338726 ECH
Lal17g0483 17 3331953 3338726 Lal21g0526 21 3801255 3804632 LSH
Lal17g0483 17 3331953 3338726 Lal4g0426 4 2964394 2971500 LSH