Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0452 ATGCATCCTTTCTGCTGCGTTTCCGCGATTTCCGATCAGTCTTCACCAGTCAAACCTTCACCAACTCCTTTCCCTGACTTCACCACCACCATGCCTCCGCTTCCTTCCACCGCTGCCGCAACTGGATCCGTTTCAATGCCCCGACACAGTCGTAATCATAGTCACGGAAGCATTCTCTCCGTCGATTACACGCGCCTGAGTCAGCGTGAACAGATACAGCAGCAGCAACCGGCGGTGATTATGGACGTGAAGATCAACGACCTCGTTGGTAACGGAATCTCTGGAATACTTCACAAGTGGGTGAATTACGGTAAAGGATGGAGGCCTAGATGGTTCGTGCTTCAAGACGGTGTTCTATCTTACTACAAGATTCACGGTCCTGATAAGATCATCGTCAATTCTGAAACCGAGAAAGGATCCAAAGTCATCGGTGAAGAATCCGTTCGCAGAATCTCTCGTAACAGCAATTCATATTCTTATCAACGCCGTCGCAAACCTTTCGGTGAAATCCACCTCAAGGTTTCGAGTATTGGAGAGAGTAAATCAGATGATAGGAGATTTTCGGTGTTTACGGGAACTAAGACGATGCATTTGAGGGCAGATACGCTAGAAGATAGAGTGGCATGGATGGAGGCATTGCAGGCAGTGAAGGGTATGTTCCCTCGGATGTCAAACAGTGAGCTCATGGCTCCTGTGGACAATGTAAATGTTTCAACCGAGAAACTACGGCATCGACTTCTAGAAGAAGGGGTGAGTGAGCCAGCAATTCAAGACAGTGAGCAAATTATGAGAACTGAGTTTGCAGCCCTGCAAAACCAGCTTGTGCTTCTTAAGCAGAAGCACTCTATACTTATAGATACTCTGCGGCATTTAGAGAAAGAAAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATCAAGAGGCTTCCTCTACATTAAAGCAGGGAAAATTGAGTGATGGAACTTTTAGTGATTCTGAGGATGATAATGAGAGACATGATGCTGCAGAGGAGGAAACAGATGATGATGAGAATGCCTTTTTTGATACTCGCGATTTTCTATCATCCGGTTCTTTCAGAAGTAACGGGTCTGATTATAGAGTGTCGTCTTTGTCTTCAGATAGTGAAGGGTTCTATGCATTTGAGTCTGAGGAGGTTGTAGATCCTTCAATAACAACTGCTGTAACCAACTACCCCCATGTTAAGCGGCGAAAGAAGTTGCCTGACCCTGTAGAAAAAGAGAAAGGTGTGAGTCTTTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAAATAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTCTCCTCCCTGCAAAAGTGTTGTGAAGAAATGGAATATTCATATCTACTGGACCAAGCATATGAATGGGGAAAAAGGGGTAACAGCCTCATGAGGATTCTTTATGTTGCTGCTTTTGCTGTATCTGGCTATGCTTCAACTGAAGGAAGAGTTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAGGCCAACTTTCCAGATAAAGGCCTTCGTTTTATCTCAGAGAAGGTCAGTCATCACCCTATGATAGTTGCATGTCATTGTGAGGGTACAGGTTGGAAATTTTGGGGGGATAGCAACTTAAAGAGCAAATTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTATTTTGACTTTGGAATTTGATGATGGGGAGGTTTTCGAGTGGAGCAAGGTTACTTCTTCAATATACAATCTCATATTGGGAAAGTTGTACTGTGATCACTATGGTACAATGCGTATACAAGGAAACCGAGATTACTCATGTAGACTGAAATTCAAGGAACAGTCTATAATTGATCGAAATCCCCACCAGGTTCATGGTGCTGTTCTAGATAGGAATAGAAAAACAGTGTCAACTTTGTTTGGGAAATGGGATGAAAGCATGCATTATGTTAATGGAGACTACAGTGGAAAGGGGAAAGGCCTTGAATCATTATCAGAAGCACATTTACTCTGGAAGAGGAGCAAGCCTCCTGCAGATCCCACCAGATATAACTTCACCCGCTTTGCCATGACATTAAATGAACTAACCATTGGATTAAAGGAAATATTGCCACCTACTGATTCCAGGTTAAGACCAGACCAGAGGTATTTGGAAAATGGGGAGTTTGAAATGGCAAATTCAGAAAAGTTACGTTTAGAGCAGCGGCAACGTCAGGCTCGGAAGATGCAAGATACTGGTTGGCAACCACACTGGTTTTCTATGGATAAAGCGAGTGGAACATACCGCTACATCGGAGGGTATTGGGAAGCCAGACAAGCAGGAAACTGGACCTCCTGTCGTGACATCTTCGGTCAAATTCCTTCAGATCATCTTTCTGATGATGGTCAAATTACAGCTTAG 2421 0.4374 MHPFCCVSAISDQSSPVKPSPTPFPDFTTTMPPLPSTAAATGSVSMPRHSRNHSHGSILSVDYTRLSQREQIQQQQPAVIMDVKINDLVGNGISGILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNSETEKGSKVIGEESVRRISRNSNSYSYQRRRKPFGEIHLKVSSIGESKSDDRRFSVFTGTKTMHLRADTLEDRVAWMEALQAVKGMFPRMSNSELMAPVDNVNVSTEKLRHRLLEEGVSEPAIQDSEQIMRTEFAALQNQLVLLKQKHSILIDTLRHLEKEKVDLENTVVDESQRQWNDQEASSTLKQGKLSDGTFSDSEDDNERHDAAEEETDDDENAFFDTRDFLSSGSFRSNGSDYRVSSLSSDSEGFYAFESEEVVDPSITTAVTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLNKVCLPVYFNEPLSSLQKCCEEMEYSYLLDQAYEWGKRGNSLMRILYVAAFAVSGYASTEGRVCKPFNPLLGETYEANFPDKGLRFISEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFEWSKVTSSIYNLILGKLYCDHYGTMRIQGNRDYSCRLKFKEQSIIDRNPHQVHGAVLDRNRKTVSTLFGKWDESMHYVNGDYSGKGKGLESLSEAHLLWKRSKPPADPTRYNFTRFAMTLNELTIGLKEILPPTDSRLRPDQRYLENGEFEMANSEKLRLEQRQRQARKMQDTGWQPHWFSMDKASGTYRYIGGYWEARQAGNWTSCRDIFGQIPSDHLSDDGQITA 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0452 806 MobiDBLite consensus disorder prediction 31 54 - -
Lal17g0452 806 CDD PH_ORP_plant 93 225 - -
Lal17g0452 806 Gene3D - 721 784 - -
Lal17g0452 806 Pfam Pleckstrin homology domain 98 214 - -
Lal17g0452 806 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 797 - -
Lal17g0452 806 MobiDBLite consensus disorder prediction 307 353 - -
Lal17g0452 806 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 797 IPR000648 GO:0008289
Lal17g0452 806 MobiDBLite consensus disorder prediction 307 326 - -
Lal17g0452 806 Coils Coil 281 308 - -
Lal17g0452 806 SUPERFAMILY PH domain-like 93 218 - -
Lal17g0452 806 MobiDBLite consensus disorder prediction 11 54 - -
Lal17g0452 806 SUPERFAMILY Oxysterol-binding protein-like 419 799 IPR037239 -
Lal17g0452 806 Gene3D - 510 685 - -
Lal17g0452 806 MobiDBLite consensus disorder prediction 337 352 - -
Lal17g0452 806 Gene3D - 91 219 IPR011993 -
Lal17g0452 806 Pfam Oxysterol-binding protein 424 778 IPR000648 GO:0008289
Lal17g0452 806 ProSiteProfiles PH domain profile. 90 218 IPR001849 -
Lal17g0452 806 SMART PH_update 91 220 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0452 Lal-Chr17 3094545 3100849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0452 K20456 - gmx:100137077 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0452 17 3094545 3100849 Lal17g0452 17 3094545 3100849 ECH
Lal17g0452 17 3094545 3100849 Lal21g0505 21 3614944 3621985 LSH
Lal17g0452 17 3094545 3100849 Lal4g0398 4 2751661 2759395 LSH