Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0400 ATGCAGAAGCATAGAACCGTTCCATTGGGCACTTTGAGAAGGTTTATCGCTGCAACCATGTGTTCCATATCTATTATGTCTTTATTCTTAATCCATGTTCATGTTTCTCCTTCCCCCACTCATCACAAGTTCAATGACAAGATCCCCGCGATTCATGATCTGCAAAGGTGGACAAGAGAGCTCACTCCACCCCATTTATCCAAGACTCTAATTGCTACTCCAAAGTTGAAAGATTCAATTGGAGATTCAGATTATGAGAGATTGTGGAAGCCTCCATCTAATCGTGGCTTTCTGCCCTGTACAAAGCCTAGTTCTAATTACACAGCTCCTGCAGTGTCGCGAGGTTACCTTTCAGTACATACAAATGGTGGGCTCAATCAAATGCGTACCGGGATATGTGATATGGTAGCTATAGCTCGAATCATAAATGCCACTCTTGTAATTCCAGACCTTGACAAAAATTCATTCTGGCAAGATACTAGTAGTTTCTCAGATATCTTTGATGAAGAGTGGTTTATTAGTTCTTTAGCTAATGATGTAAAAATCATTAAGAAGCTTCCAAAAAGTGTAGCTAAACCAACCAGAATTGTGAAGCAATTCAAGAGCTGGTCTGGTGTGAATTACTATGAGAATGAGATTGCTGCCATGTGGGATCATTTCAAAGTTATTCGAGCTTCAAAATCCGATTCTCGGTTAGCAAATAACAATCTACCTTCAGATATTCAAAAGCTTCGCTGCCGCGCTTGTTTTGAAGCTCTCCGTTTCTCTCCTCGCATTGAACAAATGGGAAAAATGTTAGTGGAGAGGATGAGGTCATTCGGTCCTTATATTGCATTGCATTTACGATACGAGAAGGATATGCTTGCATTTAGCGGTTGCACCCATGATTTATCTACAGCTGAGGCTGAAGAGTTGAGGATTATCAGAAAAAGAACTACTTATTGGAAAAGAAAGGATATTGATCCCATGGAAGAGAGGTCCAAAGGGTTTTGCCCTCTAACGCCAAAGGAAGTTGGAATTTTTCTTACAGCTCTTGGATACTCGTCCAAGACTCCGATATATATTGCAGCAGGGGATATATACGGGGGCGAGTCTCATATGACTGAACTGCGATCCCGCTATCCATTGTTACTGAGCAAGGAAAAGTTGGCATCCATTTTGGAGCTTGAACCCTTCACTAATCATGCATCTCAAATGGCTGCTCTTGACTATATTGTATCAGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCGAGGGCTGTTGAAGGCCATCGCCGATTTCTTGGGCGTGGAAGAACGATATCTCCAGACAGGAAAGCCCTTGTTCGCCTGTTTGATAAACTGGCAAATGGAACAATCATTGAGGGCAAAACTCTATCAAACAAAGTTATTGATCTCCACAAAAAGAGGATTGGGTTGTTGAAGAAAAGAAAAGGGCCCATTTCAGGAACAAAGGGTGCGGACAGGTTTCGTTCAGAAGAATCATTTTATGCAAACCCTTCTCCTGATTGCTTTTGTAGGACAGAAAATAATCACCTCCTATAA 1557 0.4143 MQKHRTVPLGTLRRFIAATMCSISIMSLFLIHVHVSPSPTHHKFNDKIPAIHDLQRWTRELTPPHLSKTLIATPKLKDSIGDSDYERLWKPPSNRGFLPCTKPSSNYTAPAVSRGYLSVHTNGGLNQMRTGICDMVAIARIINATLVIPDLDKNSFWQDTSSFSDIFDEEWFISSLANDVKIIKKLPKSVAKPTRIVKQFKSWSGVNYYENEIAAMWDHFKVIRASKSDSRLANNNLPSDIQKLRCRACFEALRFSPRIEQMGKMLVERMRSFGPYIALHLRYEKDMLAFSGCTHDLSTAEAEELRIIRKRTTYWKRKDIDPMEERSKGFCPLTPKEVGIFLTALGYSSKTPIYIAAGDIYGGESHMTELRSRYPLLLSKEKLASILELEPFTNHASQMAALDYIVSVESDVFVHSYPGNMARAVEGHRRFLGRGRTISPDRKALVRLFDKLANGTIIEGKTLSNKVIDLHKKRIGLLKKRKGPISGTKGADRFRSEESFYANPSPDCFCRTENNHLL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0400 518 CDD O-FucT_plant 116 437 IPR024709 -
Lal17g0400 518 PIRSF UCP009360 1 514 IPR024709 -
Lal17g0400 518 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
Lal17g0400 518 PANTHER OS02G0726500 PROTEIN-RELATED 4 515 - -
Lal17g0400 518 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 4 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0400 Lal-Chr17 2701883 2707308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0400 60 513 Miscellaneous Gene Families AT1G22460 66.079 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0400 - - gmx:100807411 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0400 17 2701883 2707308 Lal17g0400 17 2701883 2707308 ECH
Lal17g0400 17 2701883 2707308 Lal4g0355 4 2410694 2415163 LSH
Lal6g0461 6 2924488 2929767 Lal17g0400 17 2701883 2707308 PCT
Lal17g0400 17 2701883 2707308 Lal6g0461 6 2924488 2929767 PCT