Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0275 ATGGCAACAAAAGCAAAAGAGAGTAGTGTAGTTGGGAAGGAGAAGAAGGCATCATCTTCAAATTCTCCCATCACAACCACCAAAAAGACAACCAAACCAACAACAACAACAGAGAAACAAGTCCCAAACTATCTGAAACCCACAATAAGCTCACGCCTTGTTGAGTCAAACTCCTTCAAACTCACAAGGACTAATGATGTCTCAAACAAGCAACCTAGTTTAAACAGAAGAAGATCTTTTGATAAGCCACCATCTCCTTCAAGGTTACCAAAACAAACACACCCTTCTCCACCTTTTTCAAGACAACATAAAGCCCTTGTCTCCCCTGGCCCACGTGAGAGATCACTGTCATTGCCACTTAAAACTACTAACTCTTCCAAGCCTGTTCCACAGAGGCTCTCAAATACTCCCAAGGAAGGAAAAACACATCAACCAGCATTGTTTGCTAAGAGTGACAAGAAGAGTAGAGGCCCCACTCCTTCTACCTCAACAACCGCTAACAAGGTAGCTAAAGATGATTCTTTTGAGTCAACCAAGGACACAAAGAGTAGTGATGCTGAAACTACTACAGAAGTAACAAATGTTGAGACTGAGACAGAAGTTAAAGAAGCCATAGGTGAAAAGGTTGAGGCTGAAGAAGTAGAGAAACAAGAACACGAGGTTGAAAATAAGGCTGAATCTGAGGATTCACCTCATGTTGAATCTGAACATGAATATGAAAATGAGCATGACCATGATCATGAGGTTGAGGAATCTGATCAGTCTCACGTTCAAGCTGATCAAGATAAAAATTTAAGCCCTACAATGCCAGAAGTAGAAGCTGCAAAAGAAGAGAAAAATGAAGAGAATGAGAATAGAAACCAAGAAGAATTCAACAATATTAATGGGACAATACAAGAAAATGATCATTCTACAACTGAAGAAGAAGTTGAGGTAAAAGAAAAAGAGGAAGAAGAAGAAGGTGGAGAAATAATAGAAGAACACAAAACTGAGAACAAAAATGAGGAAGAGGCAGTAGTTGAAGAAGAAGAAGAGAAAGAAGGTGTTGAAGGAGGAATAAATGAAGAGGTTAATGTGAATAAGGAAGGAGAAGATGAAGAAGAAGAAGTCAATGCTGAAGAGTCAACAGAATCTAAGCAACAAATGCAACATGGGAAGAAAGAGGCTCAGGTATCCAATGATGTCATAGAAGAAACTGCAAGCAAGCTTTTGGAGGCAAGAAAGAACAAAGTCAGAGCATTGGCTGGGGCATTTCAAACCGTAATTGATCATCAAACCAACTGA 1284 0.3964 MATKAKESSVVGKEKKASSSNSPITTTKKTTKPTTTTEKQVPNYLKPTISSRLVESNSFKLTRTNDVSNKQPSLNRRRSFDKPPSPSRLPKQTHPSPPFSRQHKALVSPGPRERSLSLPLKTTNSSKPVPQRLSNTPKEGKTHQPALFAKSDKKSRGPTPSTSTTANKVAKDDSFESTKDTKSSDAETTTEVTNVETETEVKEAIGEKVEAEEVEKQEHEVENKAESEDSPHVESEHEYENEHDHDHEVEESDQSHVQADQDKNLSPTMPEVEAAKEEKNEENENRNQEEFNNINGTIQENDHSTTEEEVEVKEKEEEEEGGEIIEEHKTENKNEEEAVVEEEEEKEGVEGGINEEVNVNKEGEDEEEEVNAEESTESKQQMQHGKKEAQVSNDVIEETASKLLEARKNKVRALAGAFQTVIDHQTN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0275 427 MobiDBLite consensus disorder prediction 196 258 - -
Lal17g0275 427 MobiDBLite consensus disorder prediction 117 141 - -
Lal17g0275 427 Coils Coil 194 229 - -
Lal17g0275 427 MobiDBLite consensus disorder prediction 172 186 - -
Lal17g0275 427 PANTHER CALMODULIN-BINDING PROTEIN-LIKE PROTEIN 1 426 - -
Lal17g0275 427 SMART CaM_binding_2 313 423 IPR012417 GO:0005516
Lal17g0275 427 MobiDBLite consensus disorder prediction 155 171 - -
Lal17g0275 427 Coils Coil 269 292 - -
Lal17g0275 427 MobiDBLite consensus disorder prediction 1 393 - -
Lal17g0275 427 MobiDBLite consensus disorder prediction 14 74 - -
Lal17g0275 427 Coils Coil 325 346 - -
Lal17g0275 427 MobiDBLite consensus disorder prediction 272 288 - -
Lal17g0275 427 Pfam Plant calmodulin-binding domain 315 422 IPR012417 GO:0005516
Lal17g0275 427 PANTHER EMB|CAB62594.1 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0275 Lal-Chr17 1721233 1723538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0275 - - lang:109327158 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0275 17 1721233 1723538 Lal21g0378 21 2571369 2572721 LSH
Lal17g0275 17 1721233 1723538 Lal4g0256 4 1654071 1655654 LSH