Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0244 ATGTTGCTGGTGGTGCCAGAGGGAAGTTATGCAGTGAGGCTTGGGAACAAGGCCTCTATTAAGCAAAAGATAAAGGTGGTGAAGGGAATGTACTATTCTATAACATTTATGGTAGCACGTACATGTGCACAAGATGAGAAACTCAATGTGTCTGTGGCTCCGGATTGGGTGGTGCTACCAATGCAAACATTGTATAGTAGTAATGCTTGGGATGCATATGCATGGTCCTTTCAAGCAGATTATAGTGAGATATATATGGTTTTCCATAACCCAAGAGTTGAGAATGATGAAGCTTGTGGACCACTCATTGATTCTATTGCTCTTGCAGCTCTCTACCCTCCTAAACCATCTAACAGCTCTGACCAAGTATTTGATTTCTTTCAGTTTTTGGCTTCTCAGTCAATTTTGTCAATTGAATTTATGTATATAAGTCACTGCACAGGGAATGTATTGAAGAATGGTGATTTTGAAGAAGGACCATATGTGTTCCCTAACACATCAAGCGGTGTACTTATCCCACCAAACATTGTAGACATGAGCGACCACTCTCCCATACCAGGATGGATAGTAGAGTCCCTAAAGGCAGTGAAATACATAGACTCTAACCATTTCTCAGTTCCACAAGGCAAAAGAGCCATAGAGCTAGTAGCTGGAAAAGAAAGTGCTATTTCACAAGTAGCTAGAACCATTCCTAACAAAACTTATGTGCTATCATTTGCTGTTGGAGATGCCAGAGATTCATGTGAAGGGTCATTGATTGTTGAAGCATTTGCAGGCAAAGATACCATAAAGGTTCATTATGAGTCCAAAGGAAAAGGTGGGTTTAAACGTGTATCATTCAAGTTTATAGCTACTAGCACTAGAACACGCGTTGTGTTTTATAGCTCCTTATACACCATGAGAAGTGATGAATATCAATCTTCATTTTGTGGACCAGTCATTGATGATGCTCTTCCAAATCAGCAAACTGTTGATTACCCTAGCTTCAAGCTCGTTATTGTCGGCGATGGAGGAACAGGGAAAACTACCTTTGTGAAAAGACATCTCACTGGTGAATTTGAGAAGAAATATGAACCAACAATTGGTGTGGAGGTTCACCCATTGGATTTCTTCACTAACTGTGGCAAGATTCGATTTTACTGTTGGGATACTGCTGGACAAGAAAAATTTGGTGGACTTAGAGATGGATATTATATCCATGGGCAATGTGCCATTATAATGTTTGATGTTACTGCCCGGCTGACATACAAAAATGTCCCCACCTGGCACCGTGATCTTTGCCGGGTCTGTGAAAACATCCCAATTGTTCTCTGCGGTAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACGTTTCACAGGAAGAAGAATTTGCAATACTATGAGATATCAGCTAAGAGCAACTACAACTTTGAAAAGCCTTTCCTCTACCTTGCCAGGAAACTTGCTGGGGATCCTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATTGATTTGGATGCCCAGAAAAAGCATGAGGATGAGCTTCTTGCAGCTGCTAGTCAGCCCCTTCCTGATGATGATGATGCATTTGAGTAA 1608 0.4136 MLLVVPEGSYAVRLGNKASIKQKIKVVKGMYYSITFMVARTCAQDEKLNVSVAPDWVVLPMQTLYSSNAWDAYAWSFQADYSEIYMVFHNPRVENDEACGPLIDSIALAALYPPKPSNSSDQVFDFFQFLASQSILSIEFMYISHCTGNVLKNGDFEEGPYVFPNTSSGVLIPPNIVDMSDHSPIPGWIVESLKAVKYIDSNHFSVPQGKRAIELVAGKESAISQVARTIPNKTYVLSFAVGDARDSCEGSLIVEAFAGKDTIKVHYESKGKGGFKRVSFKFIATSTRTRVVFYSSLYTMRSDEYQSSFCGPVIDDALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLDAQKKHEDELLAAASQPLPDDDDAFE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0244 535 ProSiteProfiles small GTPase Ran family profile. 322 486 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 SMART rho_sub_3 331 485 IPR001806 GO:0003924|GO:0005525
Lal17g0244 535 TIGRFAM small_GTP: small GTP-binding protein domain 329 479 IPR005225 GO:0005525
Lal17g0244 535 PANTHER GTP-BINDING NUCLEAR PROTEIN 293 533 - -
Lal17g0244 535 PANTHER RAN GTPASE 293 533 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 501 IPR027417 -
Lal17g0244 535 CDD Ran 329 494 - -
Lal17g0244 535 Gene3D - 318 534 IPR027417 -
Lal17g0244 535 ProSiteProfiles small GTPase Rab1 family profile. 323 524 - -
Lal17g0244 535 Pfam Ras family 330 486 IPR001806 GO:0003924|GO:0005525
Lal17g0244 535 SMART ran_sub_2 334 534 - -
Lal17g0244 535 Gene3D - 145 305 - -
Lal17g0244 535 SMART ras_sub_4 326 489 - -
Lal17g0244 535 SMART rab_sub_5 329 489 - -
Lal17g0244 535 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 342 356 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 389 407 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 409 430 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 445 463 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 483 505 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal17g0244 535 Pfam Protein of unknown function (DUF642) 1 108 IPR006946 -
Lal17g0244 535 Pfam Protein of unknown function (DUF642) 149 316 IPR006946 -
Lal17g0244 535 ProSiteProfiles small GTPase Ras family profile. 320 520 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0244 Lal-Chr17 1510286 1520196 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0244 K07936 - jre:109009774 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0244 17 1510286 1520196 Lal17g0244 17 1510286 1520196 ECH
Lal17g0244 17 1510286 1520196 Lal25g1070 25 13966064 13972551 ECH
Lal17g0244 17 1510286 1520196 Lal21g0348 21 2369039 2374830 LSH