Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0348 ATGGCGTCGTTGTTGCAATCATTCATTGATCCTAAGAAGAATTGGTTAGCTGCTATTCACATGAAAACCATCTCAAGGCGCCTTCGCAATTACGGGCTCCGATACGAGGATCTATATGATCCTTATTACGATCTGGATGTGAAGGAAGCTTTGAATCGGCTTCCGAAGGAGATTGTTGAGGCACGCCATCAGCGTCTTAAGCGTGCAATTGACCTTTCAATGAAACATCAATATCTCCCTGAAGATCTTCAAGCTGTGCAAACACCATTCAGGAGTTATCTTCGGGACATGTTGGCCTTTGTAAGTCTTATTGTCTTATACATAGTTAAACATTTCATAAAAAAGGCGGCGCGTAGATTTGAACCAATGTCGTTTACAAAAAGTAACCTTACTTTTGAGGACAAGACTTGGCAATGTTCTGTGGTTAGTTTTGAGCATGCTAAGCTGAAGTGTGAGTCGGGTCATAATGTTTTGAGACCTCAATTTAATCCTCCAAAGGTGAAGAGGGAGAGAGCAGAGCGTGAGGCTTTGGGAGAGGCCCAAAAGAAAAAGAAGAAAGTAGAGCAACGGGCTTTACCGAATCAGCAAACCGTTGATTACCCTAGCTTCAAGCTCGTTATCGTTGGTGATGGCGGAACAGGAAAAACTACCTTTGTGAAGAGGCATCTTACTGGAGAGTTCGAGAAGAAATATGAGCCAACAATTGGTGTGGAAGTTCACCCATTGGATTTCTTCACAAACTGCGGAAAGATTCGATTTTACTGTTGGGATACTGCTGGTCAAGAGAAATTTGGTGGCCTCAGAGATGGATATTATATCCATGGGCAATGTGCAATTATAATGTTTGATGTCACCGCCCGACTGACATACAAAAATGTTCCTACCTGGCACCGTGATCTTTGCCGGGTCTGTGAAAACATCCCAATTGTTCTCTGTGGTAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTTCACAGGAAGAAGAATTTGCAATACTATGAAATATCAGCTAAGAGCAACTACAACTTTGAGAAGCCTTTCCTTTACCTGGCCAGGAAACTTGCTGGTGATCCCAACTTACACTTTGTCGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATCGATTTGAATGCTCAGAAACAGCATGAGGATGAGCTTCTTGCAGCTGCTAGTCAGCCCCTTCCTGATGACGATGATGATGCATTCGAGTAA 1233 0.4323 MASLLQSFIDPKKNWLAAIHMKTISRRLRNYGLRYEDLYDPYYDLDVKEALNRLPKEIVEARHQRLKRAIDLSMKHQYLPEDLQAVQTPFRSYLRDMLAFVSLIVLYIVKHFIKKAARRFEPMSFTKSNLTFEDKTWQCSVVSFEHAKLKCESGHNVLRPQFNPPKVKRERAEREALGEAQKKKKKVEQRALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLNAQKQHEDELLAAASQPLPDDDDDAFE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0348 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 381 IPR027417 -
Lal21g0348 410 CDD Ran 203 368 - -
Lal21g0348 410 ProSiteProfiles small GTPase Ras family profile. 194 394 IPR001806 GO:0003924|GO:0005525
Lal21g0348 410 SMART ran_sub_2 208 409 - -
Lal21g0348 410 Coils Coil 170 190 - -
Lal21g0348 410 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 216 230 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 263 281 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 283 304 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 319 337 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 357 379 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 ProSiteProfiles small GTPase Rab1 family profile. 197 398 - -
Lal21g0348 410 PANTHER GTP-BINDING NUCLEAR PROTEIN 166 410 - -
Lal21g0348 410 TIGRFAM small_GTP: small GTP-binding protein domain 203 353 IPR005225 GO:0005525
Lal21g0348 410 SUPERFAMILY 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 4 101 IPR036544 GO:0005750|GO:0006122
Lal21g0348 410 Gene3D - 2 103 IPR036544 GO:0005750|GO:0006122
Lal21g0348 410 SMART rab_sub_5 203 363 - -
Lal21g0348 410 ProSiteProfiles small GTPase Ran family profile. 196 360 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 Pfam Ras family 204 360 IPR001806 GO:0003924|GO:0005525
Lal21g0348 410 PANTHER RAN GTPASE 166 410 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal21g0348 410 SMART rho_sub_3 205 359 IPR001806 GO:0003924|GO:0005525
Lal21g0348 410 Pfam Ubiquinol-cytochrome C reductase complex 14kD subunit 5 101 IPR003197 GO:0005750|GO:0006122
Lal21g0348 410 SMART ras_sub_4 200 363 - -
Lal21g0348 410 Gene3D - 174 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0348 Lal-Chr21 2369039 2374830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0348 K07936 - jre:109006278 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0348 21 2369039 2374830 Lal21g0348 21 2369039 2374830 ECH
Lal17g0244 17 1510286 1520196 Lal21g0348 21 2369039 2374830 LSH