Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0229 ATGACTTCGAGTACGATTCGAAAAGCGATTGGGGCGGTTAAGGATCAAACCAGTATCGGAATAGCGAAAGTGGCGAGCAACGTGGCACCGGAGTTGGAGGTCGCGGTTGTCAAGGCAACGAGCCACGACGACGACCCTGCCAGTGAGAAATACGTTCGCGAGATCCTGAATCTCATGTCGTCCTCGCGAGGCTATGTTCACGCGTGTGTCTCTGCGGTTTCGAAGCGTTTGGCGAAGACGCGCGACTGGATCGTGGCTCTGAAGGCACTCATGCTTGTTCATAGGTTGATGAATGAAGGACCTCCTCTTTTTCAGGAGGAAATTTTGTATGCTACGAGAAGAGGAACCAGGCTTCTCAATATGTCTAATTTCAGAGACGAAGCTCATTCTAGTTCATGGGATCATTCTGCTTTTGTTAGAACTTATTCTATGTACCTTGATCAACGACTTGAGTTGATGTTGTTTGATAGGAAAAGTGGTAGTGTTGCTGGTGGTGGTGGTGGTGGGAGTGCTGGAGGTTCTGTTTCTGGCGCAGATGATAGGTTTGGGGGGAGAGACAATTTTAGATCGCCACCACGGGCGATTGAGTATGAGTATGGTGGTGATTTCAGAGGAGAAAGTGGTGGGTATGTGAATGGGATGAGGAGGACGAGGTCGTTTGGTGATATGACTGAGACAGTTGGAAAGGAAGAGAAGAGGATTGTGAGTGTGACTCCTTTGAGGGATATGAAACCGGAGAGAATTTTCGGGAAGATGGGTCATTTACAGAGGCTTTTGGATAGGTTCTTGGCTTGTAGGCCAACTGGGTTGGCGAAGAATAGCAGGATGATTTTGATTGCTCTGTATCCTGTTGTGAAGGAGAGCTTTCAGCTGTATGGTGATATATGTGAGGTTCTGGCTGTGTTGCTTGACAAATTCTTTGATATGGAGTACCCTGATTGTGTTAAGGCATTTGATGCTTATGCCAGTTCGGCTAAGCAGATTGATGAGCTCGTTATGTTCTTCAATTGGTGTAAGGAAACTGGTGTAGCGAGGTCTTCGGAGTACCCAGAAGTTCAGAGGATTACTAGTAAGTTGCTGGAGACGCTGGAGGAGTTTGTGAGGGATAGGGCCAAGAAGCCAAAAAGTCCAGAAAGGAAAGAGCTGGAAGCACCGCCGGTGGTAAAAGAAGAGGAGGAACCCGTACCGGATATGAATGAAATCAAGGCACTGCCCCCACCCGAGAATTACACCCAACCCCCTCCACCCGAACCTGAGCTGAAGCCTGAGCCCAAGCCACAATTTACAGAGGACTTGGTGAATATAAGAGATGATGCAGACACTGCAGATGATCAGGGTAATAAATTTGCTTTGGCGCTCTTTGCTGGTGGAGCAGCTAACAATGGAAATGGATCATGGGAAGCTTTCCCATCAAATGGACAGCCAGAAGTGACTTCAGCATGGCAAACACCGGCTGCAGAATCTGGTAAGGCTGATTGGGAATTGGCTTTGGTAGAAACTGCTAGCAATTTATCAAAGCAGAAGGCAGCACTAGGTGGTGGATTTGATCCCTTATTGTTGACCGGAATGTATGACCAAGGAATGGTGAGGCAGCATGTGAGCTCTGCCCAACTGAGTGGAGGTAGTGCTAGCAGTGTCGCATTGCCCGGACTGGGAAAGACCACAACGCCTGTTTTAGCTCTCCCAGCCCCAGATGGAAGTGTGCAACCAGTGAATCAGGATCCATTTGCAGCATCGTTAAGCATTCCACCACCCTCATATGTGCAAATGTCTGATATGGAAAAGAAACAGCAGTTACTAGTGCAGGAGCAGCAGCTGTGGCAACATTATGCAAGGGATGGGATGCAAGGACCCGCTAGCTTGGCCAAACTTGGTGGCCCTGGATACTATGCCGGAGGTCCCATGCCAGTGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCACCCTCCGGCTTCAAATCCACCAGCGATGGTGCCACCTCTTCAGGCCCATCAGATTGTAATATTTTTTACTCAGAGAGAATTCCAAATTTTGATTAA 2046 0.4848 MTSSTIRKAIGAVKDQTSIGIAKVASNVAPELEVAVVKATSHDDDPASEKYVREILNLMSSSRGYVHACVSAVSKRLAKTRDWIVALKALMLVHRLMNEGPPLFQEEILYATRRGTRLLNMSNFRDEAHSSSWDHSAFVRTYSMYLDQRLELMLFDRKSGSVAGGGGGGSAGGSVSGADDRFGGRDNFRSPPRAIEYEYGGDFRGESGGYVNGMRRTRSFGDMTETVGKEEKRIVSVTPLRDMKPERIFGKMGHLQRLLDRFLACRPTGLAKNSRMILIALYPVVKESFQLYGDICEVLAVLLDKFFDMEYPDCVKAFDAYASSAKQIDELVMFFNWCKETGVARSSEYPEVQRITSKLLETLEEFVRDRAKKPKSPERKELEAPPVVKEEEEPVPDMNEIKALPPPENYTQPPPPEPELKPEPKPQFTEDLVNIRDDADTADDQGNKFALALFAGGAANNGNGSWEAFPSNGQPEVTSAWQTPAAESGKADWELALVETASNLSKQKAALGGGFDPLLLTGMYDQGMVRQHVSSAQLSGGSASSVALPGLGKTTTPVLALPAPDGSVQPVNQDPFAASLSIPPPSYVQMSDMEKKQQLLVQEQQLWQHYARDGMQGPASLAKLGGPGYYAGGPMPVMPYGMPPVNGMGPPSGFKSTSDGATSSGPSDCNIFYSERIPNFD 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0229 681 Gene3D ANTH domain 232 381 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lal17g0229 681 SUPERFAMILY GAT-like domain 239 369 - -
Lal17g0229 681 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Lal17g0229 681 MobiDBLite consensus disorder prediction 649 681 - -
Lal17g0229 681 MobiDBLite consensus disorder prediction 370 398 - -
Lal17g0229 681 PANTHER - 5 635 - -
Lal17g0229 681 MobiDBLite consensus disorder prediction 407 422 - -
Lal17g0229 681 MobiDBLite consensus disorder prediction 370 426 - -
Lal17g0229 681 Gene3D - 3 156 IPR008942 -
Lal17g0229 681 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Lal17g0229 681 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 635 IPR045192 GO:0048268|GO:0072583
Lal17g0229 681 SMART enth_2 30 160 IPR013809 -
Lal17g0229 681 MobiDBLite consensus disorder prediction 651 670 - -
Lal17g0229 681 Pfam ANTH domain 31 152 IPR011417 GO:0005543
Lal17g0229 681 Pfam ANTH domain 226 369 IPR011417 GO:0005543
Lal17g0229 681 CDD ANTH_N_AP180_plant 32 152 - -
Lal17g0229 681 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0229 Lal-Chr17 1421061 1425088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0229 - - gmx:100803282 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0229 17 1421061 1425088 Lal17g0229 17 1421061 1425088 ECH
Lal17g0229 17 1421061 1425088 Lal21g0331 21 2211393 2213360 LSH
Lal17g0229 17 1421061 1425088 Lal4g0214 4 1338363 1340258 LSH