Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1519 ATGGCATCTACTACACCTTCCATCACCCTCCATTTCTTCATCTTCTTCTTCTCATGTATCCTCTTAATCTTCTCCTCTATCATCTCTTCCACCATTCCTATTACTCTTCCCACTGCTCAAACCTTCAAAGAAGCTCCAAAATTCTACAACTCCCCCTCCTGTGCCACCATTATCCACCATCACAATGACACATGCTCAGACATCGCAGTCCACGTGGCATTGACCCTCGACGTCGCTTACCTCCGTGGCTCCATGGCCGCCATCCTCTCCGTTCTTCAACACTCCTCTTGTCCAGAAAACATTATTTTTCATTTTGTCTCCGCCGCCTCCAAACCTTCCTCCGCCACCGTCCTCAACCACACCCTCACCACTTCTTTCCCTTACCTGAAATTCCAAATCTACTCCTTCAATGACGGTGCCGTTGCTGGCCTCATCTCCACCTCCATTCGCTCTGCCTTAGACTGTCCCCTCAACTACGCCAGAAGTTACCTTGCGAACCTACTTCCTCTCTGCGTCACTAAAATCGTATATCTTGACTCCGACTTAGTCCTCGTCGACGACATTGCCAAACTCGCCGCCACGCCGCTTGGCTCTGACACCGTCCTAGCTGCACCGGAGTACTGCACAGCTAACTTCTCCGCCTACTTCACGCCGTCGTTTTGGTCCAACCCTTCACTCTCAGCCACCTTCGCCGGCCGCAGGCCTTGTTACTTCAATACCGGCGTGATGGTCATCGACCTCAGGCTGTGGCGGGCCGGGGACTATACGATGAGGATTCAAGAATGGATGGAGCTCCAGAAGAGAATGCGGATCTATGAGCTCGGATCTCTGCCACCGTTTCTGCTTGTATTCGCCGGGAGAATTGTCCCGGTCGATCATCGGTGGAACCAGCATGGGCTAGGCGGGGATAACTTCCGTGGGCTTTGCCGGGACTTGCATCCAGGCCCAGTGAGCTTGTTGCATTGGAGTGGGAAAGGTAAGCCATGGGCCAGGCTTGACGCCAACAGGCCTTGCGTGTTGGATGCATTATGGGCTCCCTATGATCTGCTTCAGACTCCTTTTGCTCTTGAGGCGTAG 1077 0.5311 MASTTPSITLHFFIFFFSCILLIFSSIISSTIPITLPTAQTFKEAPKFYNSPSCATIIHHHNDTCSDIAVHVALTLDVAYLRGSMAAILSVLQHSSCPENIIFHFVSAASKPSSATVLNHTLTTSFPYLKFQIYSFNDGAVAGLISTSIRSALDCPLNYARSYLANLLPLCVTKIVYLDSDLVLVDDIAKLAATPLGSDTVLAAPEYCTANFSAYFTPSFWSNPSLSATFAGRRPCYFNTGVMVIDLRLWRAGDYTMRIQEWMELQKRMRIYELGSLPPFLLVFAGRIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCVLDALWAPYDLLQTPFALEA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1519 358 Pfam Glycosyl transferase family 8 71 331 IPR002495 GO:0016757
Lal16g1519 358 PANTHER HEXOSYLTRANSFERASE 11 358 - -
Lal16g1519 358 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 11 358 - -
Lal16g1519 358 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 71 337 IPR029044 -
Lal16g1519 358 SUPERFAMILY Nucleotide-diphospho-sugar transferases 70 349 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1519 Lal-Chr16 12326486 12327562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1519 13 356 Glycosyltransferase AT3G50760 67.147 1.45e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1519 K20893 - gmx:100783054 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1519 16 12326486 12327562 Lal16g1519 16 12326486 12327562 ECH
Lal15g0144 15 1000007 1001026 Lal16g1519 16 12326486 12327562 PCT
Lal23g1382 23 14488766 14489800 Lal16g1519 16 12326486 12327562 PCT
Lal16g1519 16 12326486 12327562 Lal15g0144 15 1000007 1001026 PCT
Lal16g1519 16 12326486 12327562 Lal23g1382 23 14488766 14489800 PCT