Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1288 ATGAGAGTGAAGGAAATGCACCCTTTGTGTTGCATCTCCCTCGAGAATCCAGCAATCGGTAGCAACTCGCCGGAGCCAGACACGGCGTCGCTGTCAAGGACAAGGAGTCTTCCGGCGAGTTTCGCGGCGAGTGGATCTGAAGTCATTAATGGCGGTGGATCGGAGGCGACGGTGGCCGGCATTGTGTATAAGTGGACCAATTACGGGAAAGGATGGAGATCCCGGTGGTTCCTCCTCCGCAATGGAGTCTTATCTTACGCTAAGATCCGGTGGCCGGAAAATCTCAACCTTCTCTCTCCTCTCGACGATGTTCACCTTATCGGAGAAGTCTCCGCCAGTCGCCTCTCCAGAATGGACTCCGCCTCCGCCACCATGCGCCGTAAAAATCACAAACCACCGTCTTCTTCCGGCGTTGTACATCTCAAGATATCATCATTTAGAGAGAGCAAGTCAGATGATAGGAAGTTCTACATATTTACATCAACAAAGACTCTTCATCTGAGAACAGATTCAAGGAAAGACCGTGTGGCTTGGATTCAAGCTTTGGTGTTAACTCGTGGCTTGTATCCACTTCAAACACTCAATCATCATATCTCACTTGCATCAAATCACATATCTGTATCAACTGAGAGGCTTAAAAAGCGCTTGCTTGAAGAGGGTACCAATGAGAACCTTATAAAAGAGTGTGAGCAAATCATGCTCACTGAGTTCTCTGATTTACAAGGGCAGCTTAAAATCTTATTTCAAGAACGAACATATTTGCTTGATACAATAAGGCAGTTGGAGGCAGCTAATGTTGAAGCCGAGGCTTCTGCCATGCATGACAGTGAATACCAATTAACCAAGAATGTATTATCAAGGCTAGGACGTGGAAAATTTAGTGAATGCAGTACAACTGAATCATCCGATGATATTGAAAAACAGGAGCTAGAGGAGGTCTCGGATGAAGATGAAATCATATATTATGATACTAGAGAGAATTTTACAGAACCTGGTTTTGAATGTGGGTCAATAGGAGCTCTGGATCAGGTGAACAAGTCTGGGGAAGCTAACACACAATGCACTAATATGGAGAATAATTATGGGTATCCTCAGATAGCAAGAAGAAGAAAGCTTCCGGATCCTGTTGAGAAAGAGAAGGGTGTTAGTCTTTGGTCGATGATCAAAGACAATGTGGGCAAAGATCTCACACGAGTTTGTCTTCCTGTATACTTTAACGAACCAATATCGTCCCTTCAAAAATGTTTCGAGGACTTGGAGTACTCTTATCTTCTAGATCGAGCTTATGAATATGGAAAATCAGGAAACAGCCTCCTTCGGGCTCTGAATGTTGCTGCCTTTGCAGTTTCTGGATATGCATCATCTGAAGGTCGACACTGTAAACCCTTTAACCCTCTGTTAGGGGAAACTTATGAAGCTGATTATCCTGACAAGGGACTTCGCTTCTTTTCCGAGAAGGTCAGTCACCATCCAACTGTGATTGCATGCCACTGCGAAGGTAAAGGATGGAGGTTTTGGGCTGACAGCAACATCCGTTCAAAGTTTTGGGGAAGGTCAATTCAACTTGACCCAGTTGGAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTCCAGTGGAGCAAGGTCACAACAACAATTTACAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGAAATATGGACATACGTGGTAATCGCCAACATTCATGCAAACTCAAGTTTAAAGAGCAGTCAATTCTTGACCGAAATCCTCATCAGGTACAAGGGTTTGTTGAAGGCATTATGGGACAAAAGGTTGCCACATTAGTTGGCAAGTGGGATGACAGCTTGTATTATGTTAATGGTGATGTGAATGTGAAGCCAAAAGATTTCACTTCATTAGATGCATCATTGTTGTGGAAAAGGACTATGCCACCTACCAATCTTACTCGGTACAATTTGACATCATTTGCCATCACACTGAATGAGCTTACTCCAGGACTGAAGGAGAAGCTTCCACCCACGGATTCGAGGTTGAGACCAGATCAGCGGCACCTAGAGAATGGGGAATATGAGAAGGCTAATATAGAGAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGTTGGAAGCCTAGGTGGTTCTACCAAGGAGGTGAAAATGGAACATTTAGATATATTGGCGGATATTGGGAAGCAAGAGCTCAAGGGAGATGGAATGAATGCCCAAATATATTTGGTGAATTTAATGAAGACATTGTTGATCATTCAGATGCGTCTTGA 2289 0.4351 MRVKEMHPLCCISLENPAIGSNSPEPDTASLSRTRSLPASFAASGSEVINGGGSEATVAGIVYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLLSPLDDVHLIGEVSASRLSRMDSASATMRRKNHKPPSSSGVVHLKISSFRESKSDDRKFYIFTSTKTLHLRTDSRKDRVAWIQALVLTRGLYPLQTLNHHISLASNHISVSTERLKKRLLEEGTNENLIKECEQIMLTEFSDLQGQLKILFQERTYLLDTIRQLEAANVEAEASAMHDSEYQLTKNVLSRLGRGKFSECSTTESSDDIEKQELEEVSDEDEIIYYDTRENFTEPGFECGSIGALDQVNKSGEANTQCTNMENNYGYPQIARRRKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKSGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPTVIACHCEGKGWRFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRQHSCKLKFKEQSILDRNPHQVQGFVEGIMGQKVATLVGKWDDSLYYVNGDVNVKPKDFTSLDASLLWKRTMPPTNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANIEKQRLEKRQRMSRKMQENGWKPRWFYQGGENGTFRYIGGYWEARAQGRWNECPNIFGEFNEDIVDHSDAS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1288 762 Gene3D - 53 186 IPR011993 -
Lal16g1288 762 Gene3D - 469 644 - -
Lal16g1288 762 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 753 IPR000648 GO:0008289
Lal16g1288 762 SUPERFAMILY PH domain-like 55 183 - -
Lal16g1288 762 SUPERFAMILY Oxysterol-binding protein-like 378 756 IPR037239 -
Lal16g1288 762 Coils Coil 680 700 - -
Lal16g1288 762 Gene3D - 679 739 - -
Lal16g1288 762 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 753 - -
Lal16g1288 762 ProSiteProfiles PH domain profile. 55 187 IPR001849 -
Lal16g1288 762 SMART PH_update 56 189 IPR001849 -
Lal16g1288 762 Pfam Pleckstrin homology domain 60 182 - -
Lal16g1288 762 MobiDBLite consensus disorder prediction 669 687 - -
Lal16g1288 762 Pfam Oxysterol-binding protein 383 736 IPR000648 GO:0008289
Lal16g1288 762 MobiDBLite consensus disorder prediction 666 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1288 Lal-Chr16 9104550 9115009 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1288 K20456 - gmx:100793692 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1288 16 9104550 9115009 Lal16g1288 16 9104550 9115009 ECH
Lal15g1340 15 15452491 15463794 Lal16g1288 16 9104550 9115009 LSH
Lal15g0266 15 1810997 1818920 Lal16g1288 16 9104550 9115009 PCT