Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0573 ATGCTTCCCAATCGCTTAAACGCCGTCGTTTTATCCCTCATTCTATGTCTCCTCTTCCCACCCTTCTCTCTCGGCATTCGCTCCTTCCCAATCTTCCCCGCCGCCGCCGCCAACGGTCTCCCCGGCTTCACGGAGGCACCAGAGTACCGAAACGGAGAGTTTTGCCCCGGTTCGGGTAACCGAATCTCGTTCCTTTCATGCGACCCCTCTTTGGTTCACATCGCCATGACCCTTGACTCCGGCTACCTCCGCGGCTCCATCGCCGCCGTACATTCCGTCCTCCGCCACTCATCCTGCCCCGAGAACGTGTTTTTCCATTTCATATCCGCAGAGTTCGACCCGGTTTCCCCACGGATCCTGAACCGTTTAGTTCAATCCACTTTCCCTTCTCTGAACTTCAAAGTTTACATCTTTAGAGAGGACACAGTCATAAACCTCATATCCTCTTCAATAAGACAAGCCCTCGAGAACCCATTAAACTACGCAAGGAACTACCTTGGTGACATGCTTGACCCTTGCGTTGACCGAGTTATCTACCTCGACTCAGATATAATCGTAGTTGATGACATACACAAACTCTGGAACGTGTCACTCACTGGCACACGTGTGATCGGTGCACCAGAGTATTGCCATGCAAATTTCACAAAGTACTTCACCGATGAATTCTGGAGTGACCCTTTGTTGGCACGTGTGTTTTCTTCTAGAAAGCCATGTTATTTCAACACTGGGGTGATGATAATGGACCTTGTAAGGTGGAGGGAAGGGAATTATAAGAAAAAGATTGAAGCTTGGATGGAGTTGCAAAAGAATAAGAGAATTTATGAGTTGGGGTCATTGCCTCCTTTTTTGCTTGTATTTGGTGGTAATGTTGAAGCTATAGATCATAGGTGGAATCAGCACGGGTTAGGGGGTGATAATGTGAATGGGGTTTGTAGGTCATTGCATCCTGGTCCAGTTAGTCTTTTGCATTGGAGTGGGAAAGGTAAACCTTGGGTTAGGCTTGATGAGAAGAATCCTTGTCCTTTGGATAGTCTTTGGGAGCCTTATGATTTGTATAAGCCACATCTTGTTCATCATCACAATGGGGCAAAAGAGGAGGACCAGAATTGGAGCTTCTCTTCTTCCATATTGGTTGGTTATGCGCATGATTTGTTATAA 1158 0.4724 MLPNRLNAVVLSLILCLLFPPFSLGIRSFPIFPAAAANGLPGFTEAPEYRNGEFCPGSGNRISFLSCDPSLVHIAMTLDSGYLRGSIAAVHSVLRHSSCPENVFFHFISAEFDPVSPRILNRLVQSTFPSLNFKVYIFREDTVINLISSSIRQALENPLNYARNYLGDMLDPCVDRVIYLDSDIIVVDDIHKLWNVSLTGTRVIGAPEYCHANFTKYFTDEFWSDPLLARVFSSRKPCYFNTGVMIMDLVRWREGNYKKKIEAWMELQKNKRIYELGSLPPFLLVFGGNVEAIDHRWNQHGLGGDNVNGVCRSLHPGPVSLLHWSGKGKPWVRLDEKNPCPLDSLWEPYDLYKPHLVHHHNGAKEEDQNWSFSSSILVGYAHDLL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0573 385 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 73 349 IPR029044 -
Lal16g0573 385 SUPERFAMILY Nucleotide-diphospho-sugar transferases 72 353 IPR029044 -
Lal16g0573 385 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 9 361 - -
Lal16g0573 385 Pfam Glycosyl transferase family 8 73 333 IPR002495 GO:0016757
Lal16g0573 385 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 9-RELATED 9 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0573 Lal-Chr16 3688149 3689306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0573 6 374 Glycosyltransferase AT1G70090 74.670 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0573 - - vra:106762685 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0573 16 3688149 3689306 Lal16g0573 16 3688149 3689306 ECH
Lal16g0573 16 3688149 3689306 Lal15g0514 15 3550592 3551749 LSH
Lal16g0573 16 3688149 3689306 Lal23g1032 23 12124696 12127871 LSH