Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0394 ATGGGCAAAAAACACAAAGGGATGTTGACAATGAGGAAAAGACTGGTTTGCTGCAACAAGCAAAGGAAAGTTAGCATCGATCTCGATCAGCAACCGAGGATTGTGACATACAATGGCCTTGAGAGTTGCATTATAAATAATCAGTCATATGAAGATGAGAGCAGAACTAGCAGAGGAGATGGATGTATAACTGATTCATTTGATGATGATTACTCCACTTGTTCCTCCAGCAAAGACGCTTCTGGATCATTCTCTTCAAAATGTTTGACAATGAAAAGGGATGAACAAGGATTAGACGAATGGGAACTCTCAGTAAGTCCTCAACATTTTTATGCCAAAGAGAAGCCTTCTTATGCTATTCAACATTCAGATGTAGAAGCCATGAAGGAAAAGTTTGCAAAGCTCTTGCTAGGTGAAGATGTTACAGGAGGAACTAAGAGCCTCAGTACAGCTTTCGCCCTATCTAATGCCATCACAAACCTAGCAGTAAATGTTTTTGGTGAGCTGTGGAAATTGGAGCCCCTATCTGAAGAAAGGAAGAGCAAATGGCAACGAGAAATGGGATGGTTATTGTCTCCTACCAACTATATGGTTGAGCTTGTTCCTGCTAAGCAAAGTGATGCTAATGGTGGAATGTTTGAGATAATGACCCCAAAAGCTCGTGCGGACATCCATATGAATCTTCCAGCACTGCAGAAGCTGGACTCTATGCTTATTGAGGCACTAGATTCGATGGTGAAAACTGAGTTTTGGTATGCTGAGGGAGGAAGCCGAGCAGAAGGGAGGAACACAAGTGCATGTCCGAGCAAACGATGGTGGCTTCCATCACCCCAAGTACCCAGAACTGGGCTTTCTGACACTGAAAGAAAGAGGTTGCTTCATCATGGAAGGGTGGTATCTCAAGTATTCAAGGCTGTCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCTGTGCCAGCGAATATCAAGGATGCACTTGCAAAGTCTGGGAAGGCAAACCTTGGACATGAACTGCGCAAGGTTTTGACTACTGAATCAAGCTCTGGAGAAGACATGCTTAAATCTCTCAATTTGATCTCTGAACATAGTGCCCTTGAGATCATTAACAGATTGGAAGCTGCTATATTCTCGTGGAAAGAGAGAATTTCGGAACAATTTATTGGTAAATCACCAGTTCGAGCCTCATGGTCTTTTGTAGAAGACCCTATGTCAGAGGTTGATAAAATTGAATTATTATGGGAACGTGCAGAAGCACTTTTGCAGCTGCTTAAAACCAGATACCCTAACCTTCCTCGGACATTTCTTGATGCCACTAAAGTTCAATACGGCAAGGATATTGGGCACTCTATCTTGGAAGCTTATTCCAGAGTTCTTGGAAATTTAGCGTTCAGCATACTGTCTAGGATACAAGATATAATGCAGGAGGATTCTTTAAGCAATCCTAATTCACCTGTGGTGACAAGTTGCTCTCCCGGGATAAACCTCTCGGAAACTTGTGTGATTGGTTCACATATCAGGCACTCTTTACTTGATAAGATGAATATGGCAGACGGAAAGTATTGTAGTTCTAGTTCTGCTACTAATTCTGATATAGAACCCTCATCTATTGGGGCCAAAACTAGCTCTGTAATAAGTACACCAAGCCGAAGTCGAGTTTGGTGCATTGGAAGAGAGGCTTGTATGAGTTTGTCTCCTCAGAATTCCCCATAA 1713 0.4221 MGKKHKGMLTMRKRLVCCNKQRKVSIDLDQQPRIVTYNGLESCIINNQSYEDESRTSRGDGCITDSFDDDYSTCSSSKDASGSFSSKCLTMKRDEQGLDEWELSVSPQHFYAKEKPSYAIQHSDVEAMKEKFAKLLLGEDVTGGTKSLSTAFALSNAITNLAVNVFGELWKLEPLSEERKSKWQREMGWLLSPTNYMVELVPAKQSDANGGMFEIMTPKARADIHMNLPALQKLDSMLIEALDSMVKTEFWYAEGGSRAEGRNTSACPSKRWWLPSPQVPRTGLSDTERKRLLHHGRVVSQVFKAVKSINENVLLEMPVPANIKDALAKSGKANLGHELRKVLTTESSSGEDMLKSLNLISEHSALEIINRLEAAIFSWKERISEQFIGKSPVRASWSFVEDPMSEVDKIELLWERAEALLQLLKTRYPNLPRTFLDATKVQYGKDIGHSILEAYSRVLGNLAFSILSRIQDIMQEDSLSNPNSPVVTSCSPGINLSETCVIGSHIRHSLLDKMNMADGKYCSSSSATNSDIEPSSIGAKTSSVISTPSRSRVWCIGREACMSLSPQNSP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0394 570 Gene3D PRONE domain, subdomain 1 117 353 - -
Lal16g0394 570 Gene3D PRONE domain, subdomain 1 354 487 - -
Lal16g0394 570 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 123 481 IPR005512 GO:0005085
Lal16g0394 570 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 27 561 - -
Lal16g0394 570 ProSiteProfiles PRONE domain profile. 115 487 IPR005512 GO:0005085
Lal16g0394 570 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 27 561 IPR038937 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0394 Lal-Chr16 2374601 2388926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0394 - - gmx:100778067 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0394 16 2374601 2388926 Lal16g0394 16 2374601 2388926 ECH
Lal16g0394 16 2374601 2388926 Lal15g0335 15 2265107 2271543 LSH
Lal16g0394 16 2374601 2388926 Lal16g1783 16 16917285 16928527 PCT
Lal16g1783 16 16917285 16928527 Lal16g0394 16 2374601 2388926 PCT