Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1650 ATGTCTGTGAACAATAATAACTCTTCAAAAGGAATTGGGTCCTCTTCCTTACCCTTTGGAAATGCTACTTCAATTCCATCAAACCCTGGATTTTCACAATCCCAAGGACAAGCTCAAATTGGTGCTGGTTTTCAAGGCCAGTTTCCACTTTCCCAAGCCCATGCCATTGCCCAAGCACAGTCTAAGGCTGCTCATGCCCAAGCAGCAGCTCATGCTCAGCTCCAGGCCCATTTGCAGGCTCAAGGATTGACTCTTAATCAGAGCCAGTCTGGTGGTTTGGGGAATTTAGGGGTGTCGCCGACATTGGGTTCGACACCTGGTAATGCGAGTGGGAAGCGGATGCCTTTGAAACCCCCTGTTCGGCCTGTTGGATTTTCGCCTCCGAATAGCTTCTCGCCTTTGAGACCGATGGAACTCACGCCTGCTGCGTTGAATCGGAGGAAGAAGCAGAAGATACCTGAGAAACAGCTTCACGAGAAAGTGGCGGCTATACTGCCGCAGTCTGCTCTGTACACCCAGCTTCTCGAGTTTGAGTCTCGCGTAGATGCTGCGCTGTCTAGAAAGAAGGTTGATATACAGGAAGCACTCAAGAATCCACCTTGTATTCAGAAAACTCTCCGAATATACGTTTTTAATACCTTTGCTAATCAAGTTCGCACGATTCCGAAGAAGCCAAATGCCGAGCTTCCTACCTGGACGCTGAAGATAGTTGGGAGAATATTGGAAGATGGTATAGACCCTGATCAGCCAGGAGTAGTCCAGAAGTCATCTGTATTGTATCCGAAGTTCTCAGCTTTCTTCAGAAGAGTGACCATTTCTTTGGATCAGACACTCTATCCTGATAATCACGTGATTATTTGGGAGAATTCCCGATCACCTGCTCCTCATGAAGGTTTTGAGGTTAAGAGGAAAGGAGATGAAGAATTCACAGTGAGTATCCGGTTGGAAATGAATTATGTACCTGAAAAGTTTAAACTATCACAAGCATTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAGTTATTGCTGCAATCTGGCATTATGTGAAGGCCAGGAAATTGCAAAACCCAAATGACCCTTCTTTCTTTCACTGCGATCAGCCTCTTCAGAAAGTATTCGGGGATGAAAAGGTGAAGTTTACTATGGTTTCACAGAAAATATCACATCATTTGTTCCCTCCACAGCCTATATTGTTGGAGCATAAGATTAAACTCTCGGGAAACAGTCCAGCCGGAACTGCTTGTTATGATGTGACGGTTGATATTCCTTTTCCTATTCAGAGGGAGTTGTCTGCATTATTGGCTAGTGTGGAGAAGAATAAAGAGATTGATACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCATGAGCACCGTAGGAGACGAGCGTTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCCTTGATTGAGTCTCAAAGCAAGGATTTGAAATTTGTAGCCGGAGAACCCAGTCGCAATGCTGAAAAAGAAGGTCGATCAGAATTCTTCAACCAACCATGGGTTGAAGACGCCGTTATTCGATATTTGAATCGCAAACCAGCTGCAGGAAATGATGCTCCAGGAAGCACATGA 1620 0.4469 MSVNNNNSSKGIGSSSLPFGNATSIPSNPGFSQSQGQAQIGAGFQGQFPLSQAHAIAQAQSKAAHAQAAAHAQLQAHLQAQGLTLNQSQSGGLGNLGVSPTLGSTPGNASGKRMPLKPPVRPVGFSPPNSFSPLRPMELTPAALNRRKKQKIPEKQLHEKVAAILPQSALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQVRTIPKKPNAELPTWTLKIVGRILEDGIDPDQPGVVQKSSVLYPKFSAFFRRVTISLDQTLYPDNHVIIWENSRSPAPHEGFEVKRKGDEEFTVSIRLEMNYVPEKFKLSQALTEVLGIEVDTRPRVIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGDEKVKFTMVSQKISHHLFPPQPILLEHKIKLSGNSPAGTACYDVTVDIPFPIQRELSALLASVEKNKEIDTCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKFVAGEPSRNAEKEGRSEFFNQPWVEDAVIRYLNRKPAAGNDAPGST 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1650 539 Gene3D SWIB/MDM2 domain 316 400 IPR036885 -
Lal13g1650 539 CDD SWIB_like 326 394 - -
Lal13g1650 539 SMART swib_2 320 399 IPR019835 -
Lal13g1650 539 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 87 531 - -
Lal13g1650 539 MobiDBLite consensus disorder prediction 91 136 - -
Lal13g1650 539 MobiDBLite consensus disorder prediction 1 42 - -
Lal13g1650 539 SUPERFAMILY SWIB/MDM2 domain 314 404 IPR036885 -
Lal13g1650 539 Pfam SWIB/MDM2 domain 323 394 IPR003121 -
Lal13g1650 539 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 87 531 - -
Lal13g1650 539 MobiDBLite consensus disorder prediction 91 108 - -
Lal13g1650 539 ProSiteProfiles SWIB/MDM2 domain profile. 319 396 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1650 Lal-Chr13 16294310 16297064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal13g1650 SWIB 6.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1650 K11650 - gmx:100789681 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1650 13 16294310 16297064 Lal13g1650 13 16294310 16297064 ECH
Lal12g1346 12 16589517 16592354 Lal13g1650 13 16294310 16297064 ECH
Lal12g1346 12 16589517 16592354 Lal13g1650 13 16294310 16297064 LSH
Lal10g0139 10 1600861 1603924 Lal13g1650 13 16294310 16297064 PCT
Lal13g1650 13 16294310 16297064 Lal10g0139 10 1600861 1603924 PCT