Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0139 ATGTCTGAGAACAATAGCATGCCTTCCAAGGGCCCTGGTGGTGGTTCTATGTCACATTTTGGAAATGCCGGAATAGGATTTCATTCGACATCGGGAAACCCCGTATTTTCGTATTCCCAACCCCAGATTTCGGCTGGTTTTCAGGGTCAGTATATGCTGTCCCAAGCTCAAGCACATGCCATTGCCCAAGCCAATGCCCAAGCTCAGTTCCAGGCTCAGTTACAAGCACATGGGCTGAATCTTAATCAGAATTTTGGCATGCCGCGGTCCTTTTTCTCGGCATTGGCTGGTAATGCAATTGCGAAGCGTTTACCTATGAAAGCCCCGACTCAGGCTGTTGGATTTTCGCCTCTGAAGCCTGTGGAACTTATGCCTGGTGCTCGGAGAAAGAAGCAGAAGCTTCATGAGAAGCATATTCAGGATAGAGTTGCTAGTGTTCTGCCCGAGTCTGCTATTTACACACAGCTTCTCGAGTTTGAGGCTCGTGTCGATGCTTTGTATGCTAGAAAGAAGGTTGACATCCAAGAAGCACTTAAAAACCCACCTTGCGTTCAGAAAACACTTCGTATTTATGTGTTCAACACTTTCGCTAACCAAACTCGCACGTTTCCTATGAAGTCGAATGCTGAACCTCCTACTTGGACCCTTAAGATAGTTGGGAGAATATTGGAAGATGATGAAGAACCTGATCAACCTGGAGGTGTTCAGAAGTCATCTGAGTCGTATCCGAAGTTTTCATCTTTCTTCAAAAGAGTTACCATTAGTTTAGATCAGAGACTGTATCCTGATAATCACATTATTAAGTGGGAGAGTGCTCGATCAGCCGCTCCTCATGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAATTTTCAGCACATATACGTTTCGAAATGAACCATATACCTGAGAAATTTAAGCTTTCACCAGCATTGAAAGAAGTCCTTGGTATTGAGGTCGATACTCGACCAAGAATTGTTGCTGCTATTTGGCATTATGTGAAGGCCAAGAAATTACAGAACCCAAATGATCCTTCTTTCTTTCACTGTGATCAGCAACTTCAGAACGTATTTGGGGAAGAAAAGATGAAATTTACGGATGTTTCACAGAGGTTATCACACCATTTACTCCCTCCACAACCTATACTCTTGGAGCATAAGATCAAGCTCTCGGGAAATAGTCCAGTTGGAAGTGCTTGTTACGATTTGATGGTTGATATTCCTTTCCCTAGTCAGATGGAGTTGTCTGCATTATTGGCTAATACGGAGAAGATCAAAGAGATTGATGCATGTGATGAAGCTATATGTGGAATCATTAAAAAAATCCATGAACACCGTAGGAGAAGAGCGTTTTTTCTTGGTTTCAGTCAATCTCCTGTGGAATTGATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAACTCGCAGCTGGGGAGTCTAGTCGCAATGCTGAAAAAGAGCGTAGATCGGATTTCTTTAACCAATCATGGGTTGAAGATGCTGTTATTCGTTACTTGAATCGCAAACCAGCCGCACGAAGTAATGCTCCGGGAAGCACATGA 1566 0.433 MSENNSMPSKGPGGGSMSHFGNAGIGFHSTSGNPVFSYSQPQISAGFQGQYMLSQAQAHAIAQANAQAQFQAQLQAHGLNLNQNFGMPRSFFSALAGNAIAKRLPMKAPTQAVGFSPLKPVELMPGARRKKQKLHEKHIQDRVASVLPESAIYTQLLEFEARVDALYARKKVDIQEALKNPPCVQKTLRIYVFNTFANQTRTFPMKSNAEPPTWTLKIVGRILEDDEEPDQPGGVQKSSESYPKFSSFFKRVTISLDQRLYPDNHIIKWESARSAAPHEGFEVKRKGDKEFSAHIRFEMNHIPEKFKLSPALKEVLGIEVDTRPRIVAAIWHYVKAKKLQNPNDPSFFHCDQQLQNVFGEEKMKFTDVSQRLSHHLLPPQPILLEHKIKLSGNSPVGSACYDLMVDIPFPSQMELSALLANTEKIKEIDACDEAICGIIKKIHEHRRRRAFFLGFSQSPVELINALIESQSRDLKLAAGESSRNAEKERRSDFFNQSWVEDAVIRYLNRKPAARSNAPGST 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0139 521 CDD SWIB_like 308 376 - -
Lal10g0139 521 Pfam SWIB/MDM2 domain 305 376 IPR003121 -
Lal10g0139 521 SMART swib_2 302 381 IPR019835 -
Lal10g0139 521 ProSiteProfiles SWIB/MDM2 domain profile. 301 378 IPR003121 -
Lal10g0139 521 MobiDBLite consensus disorder prediction 1 22 - -
Lal10g0139 521 Gene3D SWIB/MDM2 domain 298 382 IPR036885 -
Lal10g0139 521 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 89 518 - -
Lal10g0139 521 SUPERFAMILY SWIB/MDM2 domain 296 386 IPR036885 -
Lal10g0139 521 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 89 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0139 Lal-Chr10 1600861 1603924 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal10g0139 SWIB 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0139 K11650 - gmx:100776562 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0139 10 1600861 1603924 Lal10g0139 10 1600861 1603924 ECH
Lal10g0139 10 1600861 1603924 Lal12g1346 12 16589517 16592354 PCT
Lal10g0139 10 1600861 1603924 Lal13g1650 13 16294310 16297064 PCT
Lal12g1346 12 16589517 16592354 Lal10g0139 10 1600861 1603924 PCT
Lal13g1650 13 16294310 16297064 Lal10g0139 10 1600861 1603924 PCT