Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1346 ATGTCTGTGAACAATAATATCCCTTCAAAGGGAATTGGTTCATCTTCTTCAACCTTTGGAAATGGTGGAATACCATCAAATTCAAACCCTGGATTTTCACAATCCCAAGTTGGTGGTGGTTTTCAAGGTCAATTTCCACTTTCCCAAGCTCATGCCATTGCACAAGCACAGTCTAAAGCTGTTCATGCTCAAGCTGCTGCTGCAGCTCATGCTCAGCTTCAGGCTCATTTGCAAGCTCAAGGCTTGATGACTCTTAATCAGAGTCAGTCTGGTGGTAGTTTAGGGAATGTCGGGTTGTTGTCACAATCCGGTTCGATACCGGGTAATCCTAGTGGGAAGCGGATGCCTTTGAAACCCCCAATGCGTCCGGTTGGATTTTCGCCTATGAATAGCTTCTCGCCTTTGAGACCGATGGAACTCACACCTGCTGCCTTGAATAGAAGGAAGAAGCAGAAGCTCCCTGAAAAACAGATGCATGAAAAAGTGGCAGCTATGCTGCCTGAGTCTGCTATGTATACCCAGCTTCTCGAGTTTGAGTCTCGCGTGGATGCTGCGCTTTCTAGAAAGAAGGTTGATATCCAGGAAGCGCTCAAGAATCCACCTTGTATTCAGAAAACTCTCCGCATATATGTTTTTAATACTTTTAGTAATCAAATTCGTACAATTCCGAAGAAGGCGAATGCTGAGCCTCCTACCTGGACGCTGAAGATAGTTGGGAGGATATTGGAAGACGGTGTAGACCCTGATCAGCCAGGAGTAGTTCAGAAGTCATCTGTATTGTATCCGAAGTTCTCATCTTTCTTCAAAAGAGTAACCATTTCTTTGGATCAGAAACTCTATCCTGATAATCACGTGATTGTTTGGGAGAATTCTCGATCACCTGTTCCTCACGAAGGTTTTGAAGTTAAGAGGAAGGGAGACAAAGAATTCACCGCGAGTATTCGGTTGGAAATGAATTATGTACCTGAGAAGTTTAAGCTATCACAAGCATTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGTCCAAGAGTTATTGCTGCAATCTGGCATTATGTGAAGGCCCGGAAACTGCAAAACCCAAATGACCCTTCTTTCTTTCACTGTGATCCACCTCTTCAGAAAGTATTTGGGGATGAAAGGATGAAGTTTACAACGGTTTCACAGAAAATATCACATCATTTGTTCCCTCCGCAGCCTATACTGTTGGAGCATAAGATTAAGCTCTCGGAAAACAGTCCACCCGGAACTGCTTGTTATGATGTGACGGTTGATGTTCCTTTTCCTATTCAGAGGGAGTTGTCTGCATTATTGGCTAATGTGGAGAAGAATAAAGAGATTGATACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATCCACGAGCACCGTAGGAGACGAGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCTTTGATTGAGTCTCAGAGCAAGGATTTGAAACTTGTAGCTGGAGAACCCAGTCGCAATGCTGAAAAAGAGCGTCATTCCGATTTCTTCAACCAACCATGGGTTGAAGATGCCGTTATTCGCTATTTGAATCGCAAACCGGACGTGCCAGGAAGCACATAA 1611 0.4345 MSVNNNIPSKGIGSSSSTFGNGGIPSNSNPGFSQSQVGGGFQGQFPLSQAHAIAQAQSKAVHAQAAAAAHAQLQAHLQAQGLMTLNQSQSGGSLGNVGLLSQSGSIPGNPSGKRMPLKPPMRPVGFSPMNSFSPLRPMELTPAALNRRKKQKLPEKQMHEKVAAMLPESAMYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFSNQIRTIPKKANAEPPTWTLKIVGRILEDGVDPDQPGVVQKSSVLYPKFSSFFKRVTISLDQKLYPDNHVIVWENSRSPVPHEGFEVKRKGDKEFTASIRLEMNYVPEKFKLSQALTEVLGIEVDTRPRVIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGDERMKFTTVSQKISHHLFPPQPILLEHKIKLSENSPPGTACYDVTVDVPFPIQRELSALLANVEKNKEIDTCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVAGEPSRNAEKERHSDFFNQPWVEDAVIRYLNRKPDVPGST 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1346 536 MobiDBLite consensus disorder prediction 1 40 - -
Lal12g1346 536 MobiDBLite consensus disorder prediction 94 116 - -
Lal12g1346 536 ProSiteProfiles SWIB/MDM2 domain profile. 320 397 IPR003121 -
Lal12g1346 536 Pfam SWIB/MDM2 domain 324 395 IPR003121 -
Lal12g1346 536 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 88 531 - -
Lal12g1346 536 MobiDBLite consensus disorder prediction 94 109 - -
Lal12g1346 536 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 88 531 - -
Lal12g1346 536 CDD SWIB_like 327 395 - -
Lal12g1346 536 SUPERFAMILY SWIB/MDM2 domain 315 405 IPR036885 -
Lal12g1346 536 Gene3D SWIB/MDM2 domain 317 401 IPR036885 -
Lal12g1346 536 SMART swib_2 321 400 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1346 Lal-Chr12 16589517 16592354 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal12g1346 SWIB 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1346 K11650 - gmx:100776562 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1346 12 16589517 16592354 Lal12g1346 12 16589517 16592354 ECH
Lal12g1346 12 16589517 16592354 Lal13g1650 13 16294310 16297064 ECH
Lal12g1346 12 16589517 16592354 Lal13g1650 13 16294310 16297064 LSH
Lal10g0139 10 1600861 1603924 Lal12g1346 12 16589517 16592354 PCT
Lal12g1346 12 16589517 16592354 Lal10g0139 10 1600861 1603924 PCT