Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1095 ATGGCTGCTACAAGAGCTCGAGCTGATTATGATTATCTTATAAAACTTCTTCTCATCGGTGATAGCGGTGTAGGTAAAAGTTGCCTTCTATTGCGTTTCTCAGATGGATCTTTTACAACTAGTTTTATCACAACCATTGGCATTGATTTCAAAATAAGGACCATAGAACTTGATGGCAAACGAATCAAATTGCAAATATGGGATACAGCTGGTCAAGAGCGGTTTCGAACTATTACCACTGCTTATTACCGTGGAGCCATGGGTATTTTGCTTGTGTATGATGTCACTGATGAGTCATCTTTTAACAACATTAAGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGACAATGTCAACAAGATATTAGTGGGTAACAAGGCTGACATGGATGAAAGCAAACGGGCTGTTCCTACTTCAAAGGGTCAAGCCCTTGCAGATGAATATGGCATCAAATTTTTTGAAACTAGTGCAAAAACTAACTTGAATGTGGATGAGGTTTTCTTTTCAATAGCTCGAGACATCAAACAAAGACTCGCAGATACTGACTCAAAGGCTGAGCCTCAGGCACTGAAGATTAACCAATCAGACCAGGGATCTGGATCAGCTCAAGCCGGCCAAAAATCTGCTTGCTGTGGTTCCTAA 645 0.4078 MAATRARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDIKQRLADTDSKAEPQALKINQSDQGSGSAQAGQKSACCGS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1095 214 TIGRFAM small_GTP: small GTP-binding protein domain 12 168 IPR005225 GO:0005525
Lal13g1095 214 PRINTS Transforming protein P21 ras signature 14 35 - -
Lal13g1095 214 PRINTS Transforming protein P21 ras signature 37 53 - -
Lal13g1095 214 PRINTS Transforming protein P21 ras signature 55 77 - -
Lal13g1095 214 PRINTS Transforming protein P21 ras signature 117 130 - -
Lal13g1095 214 PRINTS Transforming protein P21 ras signature 153 175 - -
Lal13g1095 214 Gene3D - 7 212 IPR027417 -
Lal13g1095 214 PANTHER BNAA07G37610D PROTEIN 4 212 - -
Lal13g1095 214 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Lal13g1095 214 PANTHER LD44762P 4 212 - -
Lal13g1095 214 ProSiteProfiles small GTPase Ras family profile. 2 214 IPR001806 GO:0003924|GO:0005525
Lal13g1095 214 ProSiteProfiles small GTPase Rho family profile. 7 180 - -
Lal13g1095 214 SMART rab_sub_5 14 178 - -
Lal13g1095 214 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Lal13g1095 214 ProSiteProfiles small GTPase Rab1 family profile. 9 212 - -
Lal13g1095 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 208 IPR027417 -
Lal13g1095 214 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 16 29 IPR025662 -
Lal13g1095 214 SMART arf_sub_2 1 179 - -
Lal13g1095 214 SMART ras_sub_4 15 178 - -
Lal13g1095 214 MobiDBLite consensus disorder prediction 188 214 - -
Lal13g1095 214 MobiDBLite consensus disorder prediction 182 214 - -
Lal13g1095 214 CDD Rab8_Rab10_Rab13_like 11 178 - -
Lal13g1095 214 SMART ran_sub_2 19 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1095 Lal-Chr13 8280129 8285778 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1095 K07901 - twl:119990727 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0318 12 2224482 2227463 Lal13g1095 13 8280129 8285778 ECH
Lal13g1095 13 8280129 8285778 Lal13g1095 13 8280129 8285778 ECH
Lal13g1095 13 8280129 8285778 Lal2g0243 2 1418215 1421733 ECH
Lal13g1095 13 8280129 8285778 Lal1g0339 1 2031530 2037719 ECH
Lal13g1095 13 8280129 8285778 Lal8g0114 8 793476 797203 ECH
Lal13g1095 13 8280129 8285778 Lal10g1259 10 18803848 18810783 ECH
Lal12g0318 12 2224482 2227463 Lal13g1095 13 8280129 8285778 LSH