Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0318 ATGGCATCAGCACCTTCTAGAGCTCGTGCTGATTACGATTACCTCATCAAACTTCTTCTTATTGGCGATAGTGGTGTCGGGAAAAGTTGTCTGCTTTTGCGGTTTTCTGATGGTTCCTTCACTACTAGTTTCATCACCACTATTGGCATTGATTTTAAGATAAGAACCATTGAACTTGATGGCAAACGCATTAAATTACAAATCTGGGATACTGCTGGTCAGGAGCGATTTCGAACTATCACCACAGCTTACTACCGTGGAGCCATGGGCATCTTGCTGGTCTACGATGTTACTGATGAAGCATCTTTCAACAATATTAAGAATTGGATACGCAACATTGAACAACATGCTTCTGATAATGTAAACAAGATACTTGTAGGCAACAAGGCTGATATGGATGAAAGTAAAAGGGCTGTGCCAACCTCTAGAGGTCAAGCTCTTGCTGATGAGTATGGAATCAAGTTCTTTGAAACCAGTGCAAAGACAAACATGAACGTGGAGGAGGTTTTCTTTTCAATAGCAAGAGACATCAAGCAAAGGCTTGCAGACACAGATTCTAGAGCTGAGCCTCAGACTATCAAGATTAACAAACCAGACCAGGATGCCAGCGGTGGTCAAGCTGCACAAAAATCGGCTTGTTGCGGTTCATGA 651 0.4255 MASAPSRARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSRGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSRAEPQTIKINKPDQDASGGQAAQKSACCGS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0318 216 MobiDBLite consensus disorder prediction 182 216 - -
Lal12g0318 216 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Lal12g0318 216 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Lal12g0318 216 CDD Rab8_Rab10_Rab13_like 13 180 - -
Lal12g0318 216 SMART arf_sub_2 1 181 - -
Lal12g0318 216 SMART ras_sub_4 17 180 - -
Lal12g0318 216 SMART rab_sub_5 16 180 - -
Lal12g0318 216 ProSiteProfiles small GTPase Ras family profile. 4 216 IPR001806 GO:0003924|GO:0005525
Lal12g0318 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 185 IPR027417 -
Lal12g0318 216 MobiDBLite consensus disorder prediction 195 216 - -
Lal12g0318 216 Gene3D - 9 214 IPR027417 -
Lal12g0318 216 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Lal12g0318 216 SMART ran_sub_2 21 213 - -
Lal12g0318 216 PANTHER BNAA07G37610D PROTEIN 1 214 - -
Lal12g0318 216 PANTHER LD44762P 1 214 - -
Lal12g0318 216 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lal12g0318 216 PRINTS Transforming protein P21 ras signature 16 37 - -
Lal12g0318 216 PRINTS Transforming protein P21 ras signature 39 55 - -
Lal12g0318 216 PRINTS Transforming protein P21 ras signature 57 79 - -
Lal12g0318 216 PRINTS Transforming protein P21 ras signature 119 132 - -
Lal12g0318 216 PRINTS Transforming protein P21 ras signature 155 177 - -
Lal12g0318 216 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0318 Lal-Chr12 2224482 2227463 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0318 K07901 - gmx:100499844 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0318 12 2224482 2227463 Lal13g1095 13 8280129 8285778 ECH
Lal12g0318 12 2224482 2227463 Lal12g0318 12 2224482 2227463 ECH
Lal12g0318 12 2224482 2227463 Lal13g1095 13 8280129 8285778 LSH