Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1259 ATGGCTGCTCCACCCGCAAGGGCTCGTGCCGATTATGACTATCTCATAAAGCTTCTCTTGATCGGCGATAGTGGTGTCGGCAAGAGTTGCATTCTTCTGAGATTCTCTGATGGTTCTTTCACGACTAGTTTCATCACTACCATAGGCATTGATTTTAAGATAAGAACCATTGAAATGGATGGCAAACGAATCAAGCTCCAAATTTGGGATACTGCTGGTCAGGAGCGGTTTCGAACAATTACAACTGCTTACTATCGAGGTGCTATGGGCATATTGCTAGTCTATGATGTTACGGACGAGTCATCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAACATGCTTCAGACAACGTAAACAAAATACTAGTGGGGAACAAAGCTGACATGGATGAAAGTAAAAGGGCTGTGCCTACATCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCCATCGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACACAAAGGCAGAGCCAGCAGGAATCAAAATCAACCAACAAGATCAGGCAGCAGCATCAGGACAGGCTGCACAAAAATCTGCGTGCTGTGGCACTGGAAGAAAGTTTCGTTCTTTGTTATCTGTTCAAAGATATCTAACAGAAGGCATAGTAGACGTTCGTAGCCGTACAACTGGGGGTACCATACCACAAAATCAAAACACTATGCAGGTCATAACTCACAGTAGGGAAAATACTTCATTTATTAAATTACCTAATGATTGGATCGTTAAGAAGAAGCCCCGTAACAATAATTATGCTGCTGGAGTCACAAACATGACTGATATTGAGCCTGGGACTGGACAGCGGTTCCGTTCCTTGAAAGCTGTTGAGAGATATTTAGCTGGGGAAAATGGATGTACAGCTATAACCAATTCAGGGGTGAGCCCTCGATCTGGAATGCAACGCTCTTCCTTTGCTGAAGAAGAAAAAATCACGTTAAAGGCATTGAAGCATTCTACAAAGTCCACTGTATTTGACTCTCCGACGGAAACCAATTCGGGGACTGACAACAGATCTTGCATGCATAACTTATCCAAACCACCAGCAAAGGTAAAATGGGTTCTCTCTGGTTCTGGTGGCTGCTGGAACCCTTTCCTGGATGATTCTATTGTACCAGATTCTGAAAAGCTGAAATGGTCTGAAGCATTTGTACAATCCATCAATAGCTGA 1263 0.4283 MAAPPARARADYDYLIKLLLIGDSGVGKSCILLRFSDGSFTTSFITTIGIDFKIRTIEMDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDTKAEPAGIKINQQDQAAASGQAAQKSACCGTGRKFRSLLSVQRYLTEGIVDVRSRTTGGTIPQNQNTMQVITHSRENTSFIKLPNDWIVKKKPRNNNYAAGVTNMTDIEPGTGQRFRSLKAVERYLAGENGCTAITNSGVSPRSGMQRSSFAEEEKITLKALKHSTKSTVFDSPTETNSGTDNRSCMHNLSKPPAKVKWVLSGSGGCWNPFLDDSIVPDSEKLKWSEAFVQSINS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1259 420 ProSiteProfiles small GTPase Ras family profile. 6 224 IPR001806 GO:0003924|GO:0005525
Lal10g1259 420 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Lal10g1259 420 SMART ran_sub_2 21 213 - -
Lal10g1259 420 CDD Rab8_Rab10_Rab13_like 13 180 - -
Lal10g1259 420 SMART ras_sub_4 17 180 - -
Lal10g1259 420 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Lal10g1259 420 PANTHER BNAA07G37610D PROTEIN 1 214 - -
Lal10g1259 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 194 IPR027417 -
Lal10g1259 420 SUPERFAMILY DNA-binding domain 266 316 IPR016177 GO:0003677
Lal10g1259 420 SMART arf_sub_2 1 181 - -
Lal10g1259 420 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lal10g1259 420 SMART rab_sub_5 16 180 - -
Lal10g1259 420 Gene3D - 9 214 IPR027417 -
Lal10g1259 420 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 258 332 IPR001739 GO:0003677
Lal10g1259 420 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Lal10g1259 420 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Lal10g1259 420 MobiDBLite consensus disorder prediction 353 372 - -
Lal10g1259 420 PANTHER LD44762P 1 214 - -
Lal10g1259 420 PRINTS Transforming protein P21 ras signature 16 37 - -
Lal10g1259 420 PRINTS Transforming protein P21 ras signature 39 55 - -
Lal10g1259 420 PRINTS Transforming protein P21 ras signature 57 79 - -
Lal10g1259 420 PRINTS Transforming protein P21 ras signature 119 132 - -
Lal10g1259 420 PRINTS Transforming protein P21 ras signature 155 177 - -
Lal10g1259 420 Gene3D - 238 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1259 Lal-Chr10 18803848 18810783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1259 K07901 - thj:104814863 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1259 10 18803848 18810783 Lal10g1259 10 18803848 18810783 ECH
Lal8g0114 8 793476 797203 Lal10g1259 10 18803848 18810783 ECH
Lal13g1095 13 8280129 8285778 Lal10g1259 10 18803848 18810783 ECH
Lal10g1259 10 18803848 18810783 Lal8g0114 8 793476 797203 LSH
Lal10g1259 10 18803848 18810783 Lal1g0339 1 2031530 2037719 PCT
Lal10g1259 10 18803848 18810783 Lal2g0243 2 1418215 1421733 PCT
Lal1g0339 1 2031530 2037719 Lal10g1259 10 18803848 18810783 PCT
Lal2g0243 2 1418215 1421733 Lal10g1259 10 18803848 18810783 PCT