Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0377 ATGAAGTTTATGAAACTTGGTTCCAAGTCCGATACCTTTCAGAGTGATGGAAACAATATTAGGTATGTGGCAAGTGATTTAGCATCTGATATCATTGTTAGCATAGGGGATGTGAAGTTTTATTTACATAAGTTTCCTCTTCTGTTGAAGAGTGCTCACTTACAGAAGTTGATCTCCCTGAGCAATGAAGCAAACATGAGTGAAGTTCAAATTTCTGACATTCCTGGTGGCACAAGTGCCTTTGAGATATGCGCTAAGTTTTGCTATGGCATGACTGTCACCCTCAACGCTTACAATGTGATTGCAGCTCGATGTGCAGCTGAGTACCTTGGAATGAATGAGACCATTGAAAAAGGGAACCTCATTTACAAGATTGATGTTTTCCTTAGCTCTGGTATTTTCCGTAGTTGGAAGGATTCAATCATCCTTCTTCAAACTTCCAAGTCTATGTTACCTGTGGCTGAGGACCTAAAGGTGGTAAGTCATTGCATTGAATCTATAGCAAATAAGGCATGTGTTGATGTATCCAAAGTTGATTGGTCCTACACCTATAACCGGAAAAAGCTTCCAGAGGAAAATGGGAGTGATTCAAACCAGAATGAAATAAGAACTCGACTGGTGCCGAAAGACTGGTGGGTTGAAGATTTATGTGAGCTCGAAGTTGATTTGTACAAGTCTGTAATTTCAAATATTAAAACCAAGGCAGTTCATTCTAATGAAGTAATTGGTGAAGCTTTGAAAGCTTATGCTTACAGAAAATTGCCAAATTTCAGCAAGAGTATGATCCAGACTGGGGGCATGTCAAAGCACCGTTTGATAGTTGAAACTATTGTGTGGTTGCTGCCTGCTGAGAAGGGCAGTGTTTCTGGTAGGTTCTTACTCAGGTTATTGAAAGCTGCCATTTTTGTAGAGTCGGAAGAAAGGACTAGAGAAGAGCTAATAAGGAAAATTGGGCAGCAACTAGAGGAGGCTTCTGTAACTGATATTTTGATTCCAGCAAAAGATGGAGAGACTAAAACCCATGATAATAGTGTAGTGCAAACAATGGTAAGAGAGTTTCTTAATAGAGATGATAATGCCGAGATTGAATCAGTTAGGGGTGGTGAAGTTGAGGGGATAAGAAAGACAGGGATTTTATCAGATGCTTCAAAGCTGATGGTTGCAAAACTCATAGATGGATACCTTGCTGAAATTGCAAAGGATCACAATTTACCTTTGTCAGATTTTATTGATCTTGCTGAATTAGTATCTGGCATCTCTCGTCCTGCTCATGATGGGCTTTACAGGGCTATTGACACGTATCTGAAGGAGCACCCTGGTATCAGCAAAGGAGACAGGAAGAGGATATGCAAGCTGATGAATTGCAGAAAGCTATCAGTTGACGCGTGCATGCATGCAGTGCAAAACGAGAGGCTGCCGATGCGTGTAGTTGTGCAGGTCCTCTATTTTGAGCAGGTAAGGACTGCAACTTCATCAGGTACTAGTACTCCTGACATACCTAAAGGAATGAAGGATTTGAACAACGGATCCAATGGTAGCTCAAGGTCCGGGGCAACTAACCCCGAAGATGACATGGATGCTGTGGCCACAACTGAGGAGCTAAAGGCATTGAGAAAGGAACTTTCATCATTGAGACTAAGCAATGGAGTTGGTGGTAGTTTCAAAGATGAAGATATTAAATCGAGCGCAGACAAGGTTGTGAAAGGGTTGCTTAAGTCAAAAAAGTCATTCCTGAAGCTTTTGGTCAGCAAATGGGGACAAGGGGAAAATAGTGGCTCAGACTCATCAGAGAGTATTGGTTCTGCTAACCCTGAAGAAGCTAAATCTACTCCATCCAGAAATAGGAGGCATTCCGTTTCCTAA 1863 0.416 MKFMKLGSKSDTFQSDGNNIRYVASDLASDIIVSIGDVKFYLHKFPLLLKSAHLQKLISLSNEANMSEVQISDIPGGTSAFEICAKFCYGMTVTLNAYNVIAARCAAEYLGMNETIEKGNLIYKIDVFLSSGIFRSWKDSIILLQTSKSMLPVAEDLKVVSHCIESIANKACVDVSKVDWSYTYNRKKLPEENGSDSNQNEIRTRLVPKDWWVEDLCELEVDLYKSVISNIKTKAVHSNEVIGEALKAYAYRKLPNFSKSMIQTGGMSKHRLIVETIVWLLPAEKGSVSGRFLLRLLKAAIFVESEERTREELIRKIGQQLEEASVTDILIPAKDGETKTHDNSVVQTMVREFLNRDDNAEIESVRGGEVEGIRKTGILSDASKLMVAKLIDGYLAEIAKDHNLPLSDFIDLAELVSGISRPAHDGLYRAIDTYLKEHPGISKGDRKRICKLMNCRKLSVDACMHAVQNERLPMRVVVQVLYFEQVRTATSSGTSTPDIPKGMKDLNNGSNGSSRSGATNPEDDMDAVATTEELKALRKELSSLRLSNGVGGSFKDEDIKSSADKVVKGLLKSKKSFLKLLVSKWGQGENSGSDSSESIGSANPEEAKSTPSRNRRHSVS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0377 620 MobiDBLite consensus disorder prediction 490 523 - -
Lal13g0377 620 Gene3D Potassium Channel Kv1.1; Chain A 3 121 IPR011333 -
Lal13g0377 620 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 617 IPR029960 GO:0009958
Lal13g0377 620 Coils Coil 303 323 - -
Lal13g0377 620 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Lal13g0377 620 MobiDBLite consensus disorder prediction 506 520 - -
Lal13g0377 620 MobiDBLite consensus disorder prediction 586 608 - -
Lal13g0377 620 SUPERFAMILY POZ domain 22 117 IPR011333 -
Lal13g0377 620 MobiDBLite consensus disorder prediction 586 620 - -
Lal13g0377 620 Pfam NPH3 family 210 463 IPR027356 -
Lal13g0377 620 Pfam BTB/POZ domain 28 118 IPR000210 GO:0005515
Lal13g0377 620 ProSiteProfiles NPH3 domain profile. 210 487 IPR027356 -
Lal13g0377 620 Coils Coil 527 547 - -
Lal13g0377 620 PANTHER OS12G0117600 PROTEIN 1 617 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0377 Lal-Chr13 2377574 2382490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0377 8 493 EF-hand Containing Proteins AT3G44820 33.589 2.38e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0377 - - gmx:100818944 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0377 13 2377574 2382490 Lal13g0377 13 2377574 2382490 ECH
Lal12g0386 12 2738303 2743118 Lal13g0377 13 2377574 2382490 LSH
Lal13g0377 13 2377574 2382490 Lal24g0294 24 2115954 2122070 LSH