Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0386 ATGAAGTTTATGAAACTTGGTTCCAAGCCTGATACCTTTCAGACTGATGGGAATAATGTAAGGTATGTGGCAAGTGAGTTGGCATCAGATATCATTGTTTGCATAGGGCATGTGAAGTTTTATTTACATAAGTTTCCTCTTCTATCAAAGAGTGCTCACTTACAGAAGTTCATCTCTCTCAGCAATGAAACAAACATGGATGAAGTTCAAATTTCTGACATTCCTGGTGGCATAAGTGCCTTTGAGATATGCGCTAAGTTTTGCTATGGCATGACCGTCACCCTCAATGCTTACAATGTGATTGCAGCTCGATGCGCAGCTGAGTACCTTGGAATGAATGAGACTGTTGATAAAGGGAACCTCATTTACAAGGTTGATGTTTTTCTTAGCTCTAGCATATTCCGTAGTTGGAAGGATTCAATTATCCTTCTTCAAACTTCAAGGACTATGTTACCTGTGGCTGAGGACCTAAAGGTTATAAGTCATTGCATTGAATCTATAGCAAATAAGGCATGTGTTGATGTATCCAAAGTTGATTGGTCCTACACCTATAACCGGAAAAAGCTTCCAGAGGAAAATGGGATTGATTCAAACCAGAATGAAGTCAGAACTCGACTGGTGCAGAAAGACTGGTGGGTTGAAGATTTATGTGAACTTGAAGTTGAATTATACAAGTCTGTAATTGCAAATATTAAAACCAAGGAAGTTCATTCTAATGAAGTAATCGGTGAGGCTTTGAAAGCTTATGCTTGCAGAAAATTGCCAAATTTCAGCAACAGTATGATCCAGACCGGGAGCAAGTCAAAGCATCGTTCGATAGTTGAAACTATTGTGTGGTTGTTGCCTGCCGAGAAAGACAGCGTTTCTTGTAGGTTCTTACTCAAGTTATTGAAAGCTGCTATTTTTGTAGAGTCGGGAAAAAGGACTATCGAAAAGCTGATAAGGAGAATCGGACAGCAACTGGAGGAGGCTTCTGTGACTGATATTCTGATTCCAGCACCAGACGGAGAGACTAAAACCCATGATGTTAGTGTAGTACAAAAAATGGTAAGAGAGTTTCTTAAGAAAGATGACAGTGCCGAGATTGAATCGGTTGAACGTGGTGAAGTTGAGGGGATAAGAAAGCCAGGGATTTTATCAGATGCTTCTAAGCTGTTGGTTGCAAAACTCATAGATGGATACCTTGCCGAAATTGCAAAAGATCACAATTTACCTTTGTCAGATTTTATTGATCTTGCTGAGTTAGTATCTGGCATCTCTTGTCCTGCTCATGATGGGTTGTACTGGGCTATTGACACATATCTAAAGGAGCACCCTGGTATCAGCAAAGGAGACAGAAAGCGGATATGCAAGCTGATGGATTGCAGAAAGCTATCAGTTGACGCGTGTACGCATGTCGTGCAAAATGAGAGGCTGCCGTTGCGGGTAGTTGTGCAGGTACTCTACTTTGAGCAGGTAAGGACTTCTGCTTCATCAGGCACTAGCACTCCCGACATAGCTAAAGGAATCAAGGACTTGAACAGTGGATCCAATGGTAGTTCAAGGTCAGGAACAACTAACCAAGAAAATGACATGGATGCTGTGGCCACAGCTGAGGAGCTGAAGGCATTAAGAACGGAACTTGCATCGTTGAGGCTAAGCAACGGAGTTGGTGGTAGTTTCAAAGATGAAGATATTAAACCGAGTTCGGATAAGGCTGTCATTGGCAAAATGAAAGGGTTGCTCAAGTCAAACAAGTCTTTGCTGAAGCATTGGTCCAGCAAAGGGGGACAAGGGGAAAATAGTGGCTCAGACTCATCACAGAGTATTGGTTCTGCTAACCGCGAAGAAGCTAAATTTACTCCATCCAGAAATTGGAGCCATTCAGTTTCCTGA 1875 0.4197 MKFMKLGSKPDTFQTDGNNVRYVASELASDIIVCIGHVKFYLHKFPLLSKSAHLQKFISLSNETNMDEVQISDIPGGISAFEICAKFCYGMTVTLNAYNVIAARCAAEYLGMNETVDKGNLIYKVDVFLSSSIFRSWKDSIILLQTSRTMLPVAEDLKVISHCIESIANKACVDVSKVDWSYTYNRKKLPEENGIDSNQNEVRTRLVQKDWWVEDLCELEVELYKSVIANIKTKEVHSNEVIGEALKAYACRKLPNFSNSMIQTGSKSKHRSIVETIVWLLPAEKDSVSCRFLLKLLKAAIFVESGKRTIEKLIRRIGQQLEEASVTDILIPAPDGETKTHDVSVVQKMVREFLKKDDSAEIESVERGEVEGIRKPGILSDASKLLVAKLIDGYLAEIAKDHNLPLSDFIDLAELVSGISCPAHDGLYWAIDTYLKEHPGISKGDRKRICKLMDCRKLSVDACTHVVQNERLPLRVVVQVLYFEQVRTSASSGTSTPDIAKGIKDLNSGSNGSSRSGTTNQENDMDAVATAEELKALRTELASLRLSNGVGGSFKDEDIKPSSDKAVIGKMKGLLKSNKSLLKHWSSKGGQGENSGSDSSQSIGSANREEAKFTPSRNWSHSVS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0386 624 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Lal12g0386 624 SUPERFAMILY POZ domain 21 117 IPR011333 -
Lal12g0386 624 Pfam BTB/POZ domain 26 118 IPR000210 GO:0005515
Lal12g0386 624 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 620 IPR029960 GO:0009958
Lal12g0386 624 MobiDBLite consensus disorder prediction 582 624 - -
Lal12g0386 624 ProSiteProfiles NPH3 domain profile. 210 487 IPR027356 -
Lal12g0386 624 MobiDBLite consensus disorder prediction 491 524 - -
Lal12g0386 624 Gene3D Potassium Channel Kv1.1; Chain A 8 121 IPR011333 -
Lal12g0386 624 Pfam NPH3 family 210 463 IPR027356 -
Lal12g0386 624 PANTHER OS12G0117600 PROTEIN 1 620 IPR043454 -
Lal12g0386 624 MobiDBLite consensus disorder prediction 506 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0386 Lal-Chr12 2738303 2743118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0386 8 493 EF-hand Containing Proteins AT3G44820 34.741 5.11e-93 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0386 - - gmx:100807318 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0386 12 2738303 2743118 Lal12g0386 12 2738303 2743118 ECH
Lal12g0386 12 2738303 2743118 Lal24g0294 24 2115954 2122070 ECH
Lal12g0386 12 2738303 2743118 Lal13g0377 13 2377574 2382490 LSH
Lal12g0386 12 2738303 2743118 Lal24g0294 24 2115954 2122070 LSH