Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0074 ATGGCATCCCTCAAACAAGTTTCACTCATATTATTCCCTCTATTATTACTCATATCCTCCTCATTCAAGTTGTCCAATGCTGCTGGCATTGTCATCTATTGGGGTCAAAATGGTAATGAAGGGTCCTTAGCAGATGCATGCAACACTAACAACTACCAATATGTGAACATAGCCTTTTTGTCAACTTTTGGAAATGGCCAAACCCCAGAGCTAAACCTTGCTGGTCACTCTCGTGATGGGTTAAATGCTGATATCAAGGGTTGTCAGGGTAAAGGCATCAAAGTCCTTCTCTCACTTGGTGGTGGTGCTGGAAGCTACTCTCTCAACTCTGCTGATGATGCCACAAACCTTGCAAACTATCTCTGGAATAACTTCCTTGGAGGAACTTCTGACTCAAGACCCTTTGGTGATGCTGTCTTGGATGGAATTGATTTTGACATTGAAGCTGGTGGAGCCCAACACTATGATGAACTTGCAAGGGCACTGAATGGATTCAGCAGCCAAAAGAAAGTGTACTTAGGTGCAGCACCACAATGTCCAATCCCTGATGCTCATTTGGATGCAGCTATAAACACAGGGCTATTTGATTATGTGTGGGTTCAGTTCTACAACAACCCTCAATGCCAATATGCTAGTGGAAACACTAACAATCTCATTAATTCATGGAACCAATGGACTTCATCACAAGCTAAACAAGTGTTTTTGGGTCTCCCAGCATCTGAAGCAGCTGCTCCAAGTGGTGGTTTTATTCCTACTGATGTGCTCATTTCTCAAGTTCTTCCTACTATCAAGACTTCTCCTAAGTATGGTGGAGTCATGCTTTGGAACAGATTCAATGACATTCAAACTGGATATAGTGATGCCATTAAGGCCAGCGTTTAA 882 0.4274 MASLKQVSLILFPLLLLISSSFKLSNAAGIVIYWGQNGNEGSLADACNTNNYQYVNIAFLSTFGNGQTPELNLAGHSRDGLNADIKGCQGKGIKVLLSLGGGAGSYSLNSADDATNLANYLWNNFLGGTSDSRPFGDAVLDGIDFDIEAGGAQHYDELARALNGFSSQKKVYLGAAPQCPIPDAHLDAAINTGLFDYVWVQFYNNPQCQYASGNTNNLINSWNQWTSSQAKQVFLGLPASEAAAPSGGFIPTDVLISQVLPTIKTSPKYGGVMLWNRFNDIQTGYSDAIKASV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0074 293 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Lal12g0074 293 Gene3D Glycosidases 28 293 - -
Lal12g0074 293 SUPERFAMILY (Trans)glycosidases 25 290 IPR017853 -
Lal12g0074 293 PANTHER ENDOCHITINASE 14 293 - -
Lal12g0074 293 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 293 IPR001223 GO:0005975
Lal12g0074 293 CDD GH18_hevamine_XipI_class_III 28 291 IPR045321 -
Lal12g0074 293 Pfam Glycosyl hydrolases family 18 30 280 IPR001223 GO:0005975
Lal12g0074 293 PANTHER ACIDIC ENDOCHITINASE 14 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0074 Lal-Chr12 482642 483850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0074 1 293 Glycoside Hydrolase AT5G24090 58.086 9.06e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0074 K01183 - gmx:100783329 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0074 12 482642 483850 Lal13g0066 13 397142 402905 ECH
Lal12g0074 12 482642 483850 Lal12g0074 12 482642 483850 ECH
Lal12g0074 12 482642 483850 Lal24g0065 24 397460 398350 LSH