Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0066 ATGGCAAAAAACTCTTATCCCTTGCCTCTTCTCTTCTTCTTCCTCACTCTTATCGGAAGCTCTTATGCCGGTGGCATAGCCATTTATTGGGGCCAAAACGGCAACGAGGGCACACTTTCAGAAGCATGTGCCACAGGCAAATACTCTTACGTAAACATAGCATTTCTCAACAAGTTTGGCAATGGCCAAACACCTGAATTGAATTTGGCTGGTCATTGTGACCCACCTTCTGGTACCTGCACCAAGTTTAGTGCAGATATAAAGGATTGTCAAAGCAAAGGAATCAAAGTGTTGCTCTCAATTGGTGGTGGAATTGGAAGCTACTCTTTATCTTCAGTAGAAGATGCAAGAAATGTTTCAAAGTTCTTGTGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGGCCATTAGGTGATGCTGTATTAGATGGCATAGATTTTGATATTGAACTTGGCTCCACACAGAACTATGAGCACCTTGCACGTTTCCTTAAGAACTATCGAGTGTACCTAGGTGCTGCCCCTCAATGTCCAATTCCTGATAAATACTTGGGCACTGCCCTTAACACAGGACTCTTTGACTTTGTTTGGGTTCAATTCTATAATAACCCACCTTGTGCTTATGCTAATGGGAACATAACCAACCTTGTTAATTCATGGAAACGGTGGACGACTACGGTGCCAGCAGGGAAGATATTCTTGGGGTTGCCAGCAGCTACGGTGGCGGCCGGTAGCGGTTTCATTCCGGCCGACGTATTGACATCTCAAATCTTGCCTGTGATCAAGAAGTCACCAAAGTATGGAGGGGTTATGTTGTGGTCAAGGTTCTATGATTTACAGAATGGGCATGATGACATTCCACCAGACATTACTGGATCTGACTTCAAGCAAGATAATTTGTCAGAAGATTTGGTGAAGCTTGAAGGTCACCACTTCAAAGAATTGAACAAAGATTGGCTTGCAACTCTGCACACGGTCATAACTTCCGTTCTTAGTGTGGAACCTTGGATAGTTCCTTGGACAGCGAAGACTATTGTTCAGGTTATTCTCCTTTGGATTGCTTCATTTTGGTTCGTAGGATCTTGGATAGTTCCATTTTTGGCTTATACAGCAGGATTTATAAAGGAGTATCTTACATACAGAGGGCACGCTTTGTACAGCCTTTTGACTGACGTTGCTGAAGGTGTGGTTGGGATAGCATTACTTCATCGTTGTTTGGCAAAGTTCAAACCACTTTCGCCCGACTGGTTCAAATTTGAACTGAAAGGGAAGTGGCAGTTTGATGTTGGTTTAGGCTGCCTCATGTTCCCTGTTATCAATCAGTTGTCACTAGTTAACCTAAACTTGTTACCTGTTCTTCAATCTACTCCAGTTTCCAATACCATCTCAGTTGTAGAGCAATCAATTGTAGCACGGGACCCTGTGGCAATGGCCCTCTATGCGGTGGTTGTCTCGGTTTGTGCCCCTATATGGGACGAGATTGTCTTCCGTGGTTTCCTTCTCCCATCTTTAACCAAGTACATGCCTGTATGGTGCGCAATATTAATTAGTTCTGTAGCTTTTGCCTTGGCTCATTTTAACATTCAGAGGATGCTTCCTCTTGTATTTCTTGGCATGGTGATGGGTTCAGTTTTTATACGGTCTAGGAACCTCTTGCCATCAATGTCGTTGCATAGTTTGTGGAATGCTTTTGTATTTCTAGATCTCATGAAATAG 1716 0.4336 MAKNSYPLPLLFFFLTLIGSSYAGGIAIYWGQNGNEGTLSEACATGKYSYVNIAFLNKFGNGQTPELNLAGHCDPPSGTCTKFSADIKDCQSKGIKVLLSIGGGIGSYSLSSVEDARNVSKFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTQNYEHLARFLKNYRVYLGAAPQCPIPDKYLGTALNTGLFDFVWVQFYNNPPCAYANGNITNLVNSWKRWTTTVPAGKIFLGLPAATVAAGSGFIPADVLTSQILPVIKKSPKYGGVMLWSRFYDLQNGHDDIPPDITGSDFKQDNLSEDLVKLEGHHFKELNKDWLATLHTVITSVLSVEPWIVPWTAKTIVQVILLWIASFWFVGSWIVPFLAYTAGFIKEYLTYRGHALYSLLTDVAEGVVGIALLHRCLAKFKPLSPDWFKFELKGKWQFDVGLGCLMFPVINQLSLVNLNLLPVLQSTPVSNTISVVEQSIVARDPVAMALYAVVVSVCAPIWDEIVFRGFLLPSLTKYMPVWCAILISSVAFALAHFNIQRMLPLVFLGMVMGSVFIRSRNLLPSMSLHSLWNAFVFLDLMK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0066 571 Pfam Glycosyl hydrolases family 18 26 278 IPR001223 GO:0005975
Lal13g0066 571 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Lal13g0066 571 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 315 IPR001223 GO:0005975
Lal13g0066 571 PANTHER CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN 282 569 - -
Lal13g0066 571 CDD GH18_hevamine_XipI_class_III 24 283 IPR045321 -
Lal13g0066 571 Gene3D Glycosidases 24 286 - -
Lal13g0066 571 SUPERFAMILY (Trans)glycosidases 23 285 IPR017853 -
Lal13g0066 571 Pfam Type II CAAX prenyl endopeptidase Rce1-like 478 563 IPR003675 GO:0004222|GO:0016020|GO:0071586
Lal13g0066 571 PANTHER CAAX AMINO TERMINAL PROTEASE 282 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0066 Lal-Chr13 397142 402905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0066 10 283 Glycoside Hydrolase AT5G24090 65.603 1.18e-135 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0066 K07052 K01183 gmx:100809864 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0074 12 482642 483850 Lal13g0066 13 397142 402905 ECH
Lal13g0066 13 397142 402905 Lal13g0066 13 397142 402905 ECH
Lal13g0066 13 397142 402905 Lal24g0063 24 383465 386565 LSH