Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0065 ATGGCAAAACACTCTCATACTTTGCATATTCTCTTCTTCTTCCTTACTCTTGTTGGAAGCTCCTATTCTGGGGCCATAGCAATTTATTGGGGCCAAAATGGCAACGAGGGCACATTATCTGAAGCATGCGCCACCCGCAAATACTTGTATGTAAACATAGCATTCCTCAACAAGTTTGGCAACGGCCAAACCCCCGAAATGAACTTGGCAGGTCACTGCAACCCGCCTTCTGGTACCTGCACTAAGTTTAGTGCAGATATCAAGGATTGTCAAAGCAAAGGAATCAAAGTGTTGCTCTCAATTGGTGGTGGAATTGGAAGCTACTCTTTATCTTCAAAAGAGGATGCAAGAAACGTTTCAAAGTTCTTGTGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGGCCATTAGGTGATGCTGTATTAGATGGCATAGATTTTGACATTGAACTTGGCTCCACAAAAAACTATGAGCACCTTGCACGTTTTCTTAAGGATTATGGCAGGTTAGGAAGGAAGGTGTACCTAGGTGCTGCCCCACAATGTCCAATTCCTGATAAGTTTTTGGATACTGCTCTTAACAAAGGACTCTTTGACTTTGTTTGGGTTCAGTTCTATAATAACCCTCCATGTTCATATTCTAATGGTGACATAACTAACCTTGTGAATTCATGGAACCTGTGGACTACTAGGGTGCCAAAAAGCAAGATATTCTTAGGGTTGCCAGCGGCTAGTAGAGCAGCCAGTAGCGGATTCATTCCGGCCGACGTGTTGACATCTAAAATCCTGCCTGTGATCAAGAAGTCACCTAAGTATGGAGGGGTGATGTTGTGGTCAAGGTTCTATGATTTACAGGATGGATATAGTACTTCTATTATTGGAAGCGTGTGA 891 0.431 MAKHSHTLHILFFFLTLVGSSYSGAIAIYWGQNGNEGTLSEACATRKYLYVNIAFLNKFGNGQTPEMNLAGHCNPPSGTCTKFSADIKDCQSKGIKVLLSIGGGIGSYSLSSKEDARNVSKFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTKNYEHLARFLKDYGRLGRKVYLGAAPQCPIPDKFLDTALNKGLFDFVWVQFYNNPPCSYSNGDITNLVNSWNLWTTRVPKSKIFLGLPAASRAASSGFIPADVLTSKILPVIKKSPKYGGVMLWSRFYDLQDGYSTSIIGSV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0065 296 Gene3D Glycosidases 24 295 - -
Lal24g0065 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 296 IPR001223 GO:0005975
Lal24g0065 296 PANTHER ACIDIC ENDOCHITINASE 6 296 - -
Lal24g0065 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Lal24g0065 296 CDD GH18_hevamine_XipI_class_III 24 294 IPR045321 -
Lal24g0065 296 PANTHER ENDOCHITINASE 6 296 - -
Lal24g0065 296 Pfam Glycosyl hydrolases family 18 26 283 IPR001223 GO:0005975
Lal24g0065 296 SUPERFAMILY (Trans)glycosidases 22 292 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0065 Lal-Chr24 397460 398350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0065 1 296 Glycoside Hydrolase AT5G24090 63.211 1.14e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0065 K01183 - gmx:100818728 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0065 24 397460 398350 Lal24g0065 24 397460 398350 ECH
Lal12g0074 12 482642 483850 Lal24g0065 24 397460 398350 LSH