Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1211 ATGGCGCGTGTTTTTCTAATATGCGTCGTGACGGTGCTCATGGTGGTGGTTGTTTCTGGATCTCCGGCGACTATGACGCTGGAAAGAGCTTTTCCTTCCAATGATGGAGTGGAGTTGAGTCACCTCAGAGCTCGTGATATGTTAAGGCATCGAAGAATGTTGCAGTCTTCAAACGTTAGCGTCGTTGATTTCTCTGTTCAAGGGACATTCAATCCCTATGAAGTTGGGCTTTATTTTACAAAGGTGCTGTTAGGTACTCCTCCTGTGGAATTTTATGTGCAGATTGACACCGGAAGTGATGTTCTCTGGGTTAGTTGCAACTCCTGTAACGGTTGTCCCCAGACAAGCGGGCTTAAGATTCAGCTCAATTTTTTTGACCCCCGAAGTTCATCAACATCTTCAGTAATATCTTGTTCAGACCAAAAGTGCTATAGTGGAGTACAATCATCTGATGCCAGCTGTTCCAGTGAGAACAGCCAATGCTCTTACAATTTCCAGTATGGAGATGGTAGTGGGACATCGGGTTATTATGTGTCCGACTATATGCATTTTAACACTCTCTTTCACGGATCTGTGTCTACGAATTCTTCAGCTGTAGTTTTTGGTTGTAGCAATCAGCAGACCGGGGACTTGACAAAGCCTGATAGAGCTGTTGATGGAATATTTGGGTTTGGGCAACAGGACATGTCTGTCATCTCACAACTCTCCTCAAAAGGGATAGCTCCAAGGGTGTTCTCCCATTGTTTGAAAGGAAATAACAGTGGTGGAGGCATATTGGTTCTTGGTGAGATTGTGGACCCAAACATAGTTTATACTCCACTTGTTCCATCACAGCCCCATTACAATATAAATCTGCAGAGCATCTCTGTCAATGGCAAGGCATTGCAAATTGATTCATCAGTTTTTGCTACGTCAAACAACAGAGGTACGATTATTGATTCTGGAACAACTTTGGCGTACCTTGCAGAAGAAGCTTATGATCCCTTTGTCAATGCAATTACAGCTGCAATTCCACAATCTGTAAGCACTGTTGCTTCCCAGGGAAATCAGTGTTACCTAACCACATCCAGTGTCAATGATGTTTTTCCTCAAGTAAATCTGAATTTTGATGGAGGTGCATCAATGGTTTTAGGACCACGAGACTACCTCATACTGCAGAGTTCCACGGCACCAATTTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGAGTAACGATTTTAGGAGACCTTGTATTGAAGGACAAAATTTTTGTTTATGATCTAGTTGGCCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGCCGGTTAATGTCTCTGCAACAACCGGCACTGGCAGAAGTGAATCTGTTAATGGTGGAGATCTAAGTGGAAGCACTTCTTTACATAATGGACTTCACAAGTTGACAAAGATGGGGCTTTTGGCTTTCTTCTTGCACATAACACTGATTTGCTGCTCTGTGTTTTTATAG 1476 0.4309 MARVFLICVVTVLMVVVVSGSPATMTLERAFPSNDGVELSHLRARDMLRHRRMLQSSNVSVVDFSVQGTFNPYEVGLYFTKVLLGTPPVEFYVQIDTGSDVLWVSCNSCNGCPQTSGLKIQLNFFDPRSSSTSSVISCSDQKCYSGVQSSDASCSSENSQCSYNFQYGDGSGTSGYYVSDYMHFNTLFHGSVSTNSSAVVFGCSNQQTGDLTKPDRAVDGIFGFGQQDMSVISQLSSKGIAPRVFSHCLKGNNSGGGILVLGEIVDPNIVYTPLVPSQPHYNINLQSISVNGKALQIDSSVFATSNNRGTIIDSGTTLAYLAEEAYDPFVNAITAAIPQSVSTVASQGNQCYLTTSSVNDVFPQVNLNFDGGASMVLGPRDYLILQSSTAPIWCIGFQKIQGQGVTILGDLVLKDKIFVYDLVGQRIGWANYDCSLPVNVSATTGTGRSESVNGGDLSGSTSLHNGLHKLTKMGLLAFFLHITLICCSVFL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1211 491 Pfam Xylanase inhibitor C-terminal 280 430 IPR032799 -
Lal10g1211 491 Pfam Xylanase inhibitor N-terminal 78 262 IPR032861 -
Lal10g1211 491 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 451 - -
Lal10g1211 491 SUPERFAMILY Acid proteases 71 436 IPR021109 -
Lal10g1211 491 PANTHER ASPARTYL PROTEASES 7 451 IPR001461 GO:0004190|GO:0006508
Lal10g1211 491 Gene3D Acid Proteases 264 439 IPR021109 -
Lal10g1211 491 CDD pepsin_A_like_plant 78 434 IPR034161 -
Lal10g1211 491 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Lal10g1211 491 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Lal10g1211 491 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Lal10g1211 491 Gene3D Acid Proteases 53 263 IPR021109 -
Lal10g1211 491 ProSiteProfiles Peptidase family A1 domain profile. 78 430 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1211 Lal-Chr10 18497712 18501602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1211 51 435 Miscellaneous Gene Families AT1G44130 28.040 1.44e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1211 - K00924 lang:109351129 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1211 10 18497712 18501602 Lal10g1211 10 18497712 18501602 ECH
Lal25g0214 25 1456836 1462007 Lal10g1211 10 18497712 18501602 LSH
Lal10g1211 10 18497712 18501602 Lal2g0325 2 1969784 1973798 PCT
Lal2g0325 2 1969784 1973798 Lal10g1211 10 18497712 18501602 PCT