Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0650 ATGAAGAATGATGGACAGAAACAACAGCTTCTTCATCAGCGTGGTGGTGGCAAAACTAATGGTTTCATTCCGAACTCGTTTCGCACCATTTCCAGCTGCCTGAGGATTGTTTCCTCCGGTGCTTCCATGGTTGCACGCTCTGCTGCATCGGTTGCTTCGTCGATTGTGGATAAGGATGATGATGATGCTGACCCTGATCACGTTATTTGGGCTGGTTTTGACAAGTTGGACAGTGAGAATGGATTCATTCATCGAGTACTTCTTCTAGGCTATCGGTCTGGATTCCAGGTTTGGCATGTTGATGAATCAAATAATGTTCGCGACCTAGTTTCCAGACATGATGGTCCCGTTTCTTTCATGCAAGCAGTACCAAATCCAATCGGATCAAAGAGATCGGAAGACAAGTTTGCAAACAGCCGCCCACTGTTGGTAGTTTGCACTGATGGGTTCTTTGCTAGTGGCAGCAATGTTCAGGATGGGAATGGGAACACTTCGAATTCCCATGACCAAGTGAATGGAAACTGTCTGCCAACTACTGTTCAGTTTTATTCTATGAAATCCCAGTCATACGTTCATGTACTGAAGTTTAGATCAGTTGTTTATTCTGTAAGGTGCAGTCATCGAATAGTTGCCATTTGTCAATCCACTCAGATACACTGTTTTAATGCTACAACACTAGAAAGGGAATATACTTTACTTACCAATCCTATAGTCATGAGTAGTCCTGGTTCTGGAGGCATAGGGTATGGACCACTTGCAGTGGGTCCAAGATGGCTGGCCTATAGTGGAAGCCCCGTTGCAGTCTCCACTTCTGGGCGTGTCAGCCCGCAGCATTTGGCACCTTCAAATGCCCCTGGTTTTTCTTCAAATGGGAGCTTGATTGCACACTATGCCAAAGAGTCTAGCAAGAATCTTGCCTCTGGGATCGTGACCCTTGGAGATATGGGGTATAAGAAAATTTCCAAATATTACTCTGATAGCAATGGTTCATCGCAGTCTGTGAGTTCTGGCACGAAGGGCAATGGAACCATCAATGGCCATTTAGCAGATGCGGATAACATTGGAATGGTCACTGTTAGAGATATTGTCACAAAAAACATTGTTGCCCAATTCCCAGCCCACAAGAGTCCCATTTCAGCCTTATGCTTTGATCCCAGCGGCACAATTTTAGTAACCGCTTCTGTTCAGGGGCATAATATAAATGTTTTTAAGATAATGCCTAGGAATGAACAAATGTTAGCATCTGATGCAGGTCCTTCTTATGTTCATCTCTACAAGCTGCAACGTGGCTTTACGAATGCGGTATCTACAATCAACCGTGACCTTTGTGAATCTGTGTTGGACTTTTCAGTAAAAAATAGTGGGTTGGGTATTATGACTAATCAAGCAGTTCGCTGGCCGCATAGTTCAGCCTCACAAATGCCTCAACAGCAGAGCCTATGTGCTGTTGGCCCTCCACTCACACTTTCTGTAGTAAGTAGAATTAGGAATGGAGCTAATGGCTGGAAAGGCGCTGTAAGTGGTGCTGCAGCAGCTGCAACTGGTAAGAAGAGTTCCCTTTCTGGCGCTATCGCTTCATCTTTTCTTAACTGCAATGGCAGTGGTGCCTTGTATGTTGAAGGGAACCATTCCAAGGCAAAGTATCGCCTAATGGTCTTTTCACCCACTGGGTCCATGATACAATATGCTCTGCGGACTTTGAATGGTCAAGATTCGGCTGTTGTATCTCGAATAGCCCCTTCTTACGAATCCATTCCACAGCCTGATGCAAGATTAGTAATTGAAGCTACCCATAAATGGAATATATGTCAGAGACACAGTCGGCAAGTAGAAGATAATGTTGATATATATGGTGAGAGTGGAATTTCAGACAGCAATAAAATTTATCCAGAGGATGTGAAGGAGGAGGATGTCATTAGTCCTAAAATCAAGAATGTGGCCTTGAAAGGGAATTCTTCCTCTCTTGAGGATCGGCATCATTTGTATATTTCAGAAGCTGAACTACAAATGCATCAAGCTCAAACACCATTGTGGGCAAAGCCACAGATATATTTTCATTCAATATTAGAAGAGTCTACCATAATGGATGAAGAAGCTGCTTCAGGAGGCGAGTTTGAGAATGAAAGAATTCCAACTCGCATGATTGAAGTGAGGTCAAAAGACTTGGTTCCAATTGTTGACTATATTCAAACCTTGAAACTACAACAAACAAGGATTCCTGCTATTGACGGCAAGATAAACGAACAACTTAGTTCCCAGCTGTCTGGAAATGGAAGGAGTCCAGTTTCACCCAGGACTATTTTAGGATCTCCTGAGAGCATGACTAGTTCCGGTGGTGCTGTTACTGAAGTTAATAGTGAGATTGAAGGTGCAACCGAGTGGCATGATCATTTGGCGCCGCCGGAAATGATGAACTATGCTTGGAAATATTCTTTCATATCAAACTGA 2448 0.4363 MKNDGQKQQLLHQRGGGKTNGFIPNSFRTISSCLRIVSSGASMVARSAASVASSIVDKDDDDADPDHVIWAGFDKLDSENGFIHRVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQAVPNPIGSKRSEDKFANSRPLLVVCTDGFFASGSNVQDGNGNTSNSHDQVNGNCLPTTVQFYSMKSQSYVHVLKFRSVVYSVRCSHRIVAICQSTQIHCFNATTLEREYTLLTNPIVMSSPGSGGIGYGPLAVGPRWLAYSGSPVAVSTSGRVSPQHLAPSNAPGFSSNGSLIAHYAKESSKNLASGIVTLGDMGYKKISKYYSDSNGSSQSVSSGTKGNGTINGHLADADNIGMVTVRDIVTKNIVAQFPAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPRNEQMLASDAGPSYVHLYKLQRGFTNAVSTINRDLCESVLDFSVKNSGLGIMTNQAVRWPHSSASQMPQQQSLCAVGPPLTLSVVSRIRNGANGWKGAVSGAAAAATGKKSSLSGAIASSFLNCNGSGALYVEGNHSKAKYRLMVFSPTGSMIQYALRTLNGQDSAVVSRIAPSYESIPQPDARLVIEATHKWNICQRHSRQVEDNVDIYGESGISDSNKIYPEDVKEEDVISPKIKNVALKGNSSSLEDRHHLYISEAELQMHQAQTPLWAKPQIYFHSILEESTIMDEEAASGGEFENERIPTRMIEVRSKDLVPIVDYIQTLKLQQTRIPAIDGKINEQLSSQLSGNGRSPVSPRTILGSPESMTSSGGAVTEVNSEIEGATEWHDHLAPPEMMNYAWKYSFISN 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0650 815 Pfam Breast carcinoma amplified sequence 3 484 724 IPR022175 -
Lal10g0650 815 Gene3D - 64 400 IPR015943 GO:0005515
Lal10g0650 815 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 1 435 - -
Lal10g0650 815 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 449 775 - -
Lal10g0650 815 SUPERFAMILY WD40 repeat-like 85 428 IPR036322 GO:0005515
Lal10g0650 815 SMART WD40_4 187 222 IPR001680 GO:0005515
Lal10g0650 815 SMART WD40_4 364 404 IPR001680 GO:0005515
Lal10g0650 815 MobiDBLite consensus disorder prediction 751 779 - -
Lal10g0650 815 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 1 435 IPR045142 GO:0006914
Lal10g0650 815 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 449 775 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0650 Lal-Chr10 14316084 14322021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0650 - - gmx:100784596 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0650 10 14316084 14322021 Lal8g0863 8 6277282 6283983 LSH
Lal10g0650 10 14316084 14322021 Lal2g0533 2 3220145 3221404 PCT
Lal10g0650 10 14316084 14322021 Lal9g0469 9 3113870 3121394 PCT
Lal2g0533 2 3220145 3221404 Lal10g0650 10 14316084 14322021 PCT
Lal9g0469 9 3113870 3121394 Lal10g0650 10 14316084 14322021 PCT