Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2295 ATGGCAAGCTTAAAGGTTGCATGTGTGGTTTTGATGTGCATGGCTGTGATGAGTGCACCAATGATGGTGCAAGCCGTGTCATGCAATGATGTTTCTGTGAACCTAGCACCGTGCCTATCTTACCTGATGCAGGGTGGAGATGTTCCAGAATCGTGCTGTAGCGGAGTGAGGAACATTCTGGGTTCTGCCAGCACCACCTTTGACAAACAAACCGTGTGCAAATGTCTTCAGCAAGCTGCTAATAACTATGGCATCAACGACGAATACGCTCAGGCACTCCCCGCCCGCTGCAATGTCAGCGTCCCTTACAAGATCAGCCGATCCACCAACTGCGACTCCATCAAGTTCTAA 351 0.5014 MASLKVACVVLMCMAVMSAPMMVQAVSCNDVSVNLAPCLSYLMQGGDVPESCCSGVRNILGSASTTFDKQTVCKCLQQAANNYGINDEYAQALPARCNVSVPYKISRSTNCDSIKF* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2295 116 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 SMART aai_6 28 111 IPR016140 -
Gso9g2295 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
Gso9g2295 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 114 IPR036312 -
Gso9g2295 116 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Gso9g2295 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 Gene3D - 25 116 IPR036312 -
Gso9g2295 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Gso9g2295 116 CDD nsLTP1 26 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2295 Gso-Chr9 47206488 47207777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2295 4 115 Acyl Lipid Metabolism Gene Families AT2G38540 44.737 1.39e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2295 - - gmx:100306706 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g2295 9 47206488 47207777 Gso1g1103 1 44937256 44941203 PCT
Gso9g2295 9 47206488 47207777 Gso3g0340 3 5170970 5172779 PCT
Gso1g1103 1 44937256 44941203 Gso9g2295 9 47206488 47207777 PCT
Gso3g0340 3 5170970 5172779 Gso9g2295 9 47206488 47207777 PCT