Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2210 ATGGCCACACTCAAGAGCCTCTGCTTCAGAGGAACTGCCTTTCCCGTTTGCCCCTCCAATGTCACCAACAATAGAAACTCCAGGAGCTCATATTGGAGGCCTGCACAAGCAGCCGTGAAGCCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCCGAAGGTATTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAAGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGCTTGCTCACTTTCAAAGTGTGCTTTCCATGGGTCCCACAATAATCTACAATGTGCCTGCACGGACTGGTCAAGACATTCCCCCGCATGTAATTCAAACCTTAGCTGAAAGTGCTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGGATCAAGCAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGTGTGATATCTGTTGTAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGGCGGCGTAAACCCTACACTAAATTCTAAGCTTTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGAGTTGTCAGACCCGTTTTTAGGCTACCGTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGATGACTTTTTCTTGGTTAGTCGTTATTAA 1092 0.4505 MATLKSLCFRGTAFPVCPSNVTNNRNSRSSYWRPAQAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGIIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMLAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVVSNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2210 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Gso9g2210 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Gso9g2210 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Gso9g2210 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Gso9g2210 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Gso9g2210 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Gso9g2210 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
Gso9g2210 363 SMART DHDPS_2 63 339 IPR002220 GO:0016829
Gso9g2210 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Gso9g2210 363 Gene3D Aldolase class I 58 363 IPR013785 -
Gso9g2210 363 SUPERFAMILY Aldolase 66 338 - -
Gso9g2210 363 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Gso9g2210 363 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 26 363 - -
Gso9g2210 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 26 363 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2210 Gso-Chr9 46447713 46451368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2210 K01714 - gmx:100788930 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2060 18 53537964 53541354 Gso9g2210 9 46447713 46451368 GST
Gso9g2210 9 46447713 46451368 Gso3g0179 3 2319006 2322035 PCT
Gso3g0179 3 2319006 2322035 Gso9g2210 9 46447713 46451368 PCT