Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2060 ATGGCCACACTCAAGAGCGTCTGCTTCAGAGGATCCACCTTTCCCGTTTGCCCCTCCAATTTCACGAACACTAGAAACACCAGGAGCTCATGTTGGAGGCCTGCACAAGCAGCTGTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCTGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACTGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACAATAATCTACAATGTGCCTGCACGGACCGGTCAAGACATTCCTCCGCATGTAATTCAAACCTTAGCTGAAAGTGTTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGAATCAAACAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACCGGAGTGGTATCTGTTGCGAGCAACCTGGTTCCCGGTTTAATGCGAGAACTCATGTTTGGCGGTGTAAACCCTACTCTAAATTCTAAACTCTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGGGTCATCAGACCCGTTTTTAGGCTACCTTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGTTGTTGAGGTTCTTGATGATGATGACTTTTTCTTGGTTAGTCGTTATTAA 1092 0.4478 MATLKSVCFRGSTFPVCPSNFTNTRNTRSSCWRPAQAAVKSNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESVNLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVVSVASNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVIRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKVVEVLDDDDFFLVSRY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2060 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE-RELATED 11 363 - -
Gso18g2060 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Gso18g2060 363 Gene3D Aldolase class I 58 363 IPR013785 -
Gso18g2060 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Gso18g2060 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Gso18g2060 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 11 363 IPR002220 GO:0016829
Gso18g2060 363 SMART DHDPS_2 63 339 IPR002220 GO:0016829
Gso18g2060 363 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Gso18g2060 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Gso18g2060 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Gso18g2060 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Gso18g2060 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Gso18g2060 363 SUPERFAMILY Aldolase 66 338 - -
Gso18g2060 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2060 Gso-Chr18 53537964 53541354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2060 K01714 - gmx:548067 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2060 18 53537964 53541354 Gso9g2210 9 46447713 46451368 GST
Gso18g2060 18 53537964 53541354 Gso3g0179 3 2319006 2322035 PCT
Gso3g0179 3 2319006 2322035 Gso18g2060 18 53537964 53541354 PCT