Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2163 ATGAGAAGGTTTATTACTTCTGAGCTATCTTTCAGGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTTTGGGATGTGTAAGAAATTGGCTTCAAGTGGGATTGTGGTGGTGCTAACAGCTAGAGATGAGAAGAATGGCTTCAAAGCTGTTGAAAAATTGAAAGAGTTTGGTCTCTCGGACCTTCTGGTTTTTCATCAGCTTGATGTGGATGACCCTGCTAGTGTTTCTGCCTTAGCTGATTTCATCAAAACCGAATTCGGGAAACTTGATATCTTGGTAAATAATGCAGCTGTTACTGGAGGCAAATTATTAGATGCTGATGCTTTCCTTAGAAAGAGAAACGGCGAACAAATTGATTGGAATGAAGTAGGATATGAAACTTATGAGTTAGCTGAACAATGTGTGGAAACAAACTTCTATGGTGTGAAAAGGGTAACTGAAGCCCTACTTCCCCTTCTCCAGCTATCCACTTCTCCAAGAATTGTAAATATCTCCTCCAGAGCAGGGCTCTTCAAGAATATACCAAATGAGTGGGCTAGAACAATGTTGAGTGACATTGAAAATCTTACAAGAGAAAAAATAGATGGGGTACTTGAAGAGTTTCAGAAAGATTTCAAAGAGGGGTCATTGGAGATCAAAGGTTGGCCAGCTTTTGCTTCTGCTTATACAATGTCAAAAGCAGCTTTGAATGCATACACAAGGATTATGGCCAAGAAATACCCTCGTTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACAACAACACTGGACAATTAAGCATTGATGAAGGGGCTGAAACTCCTGTATTGTTGGCACTGTTGCCAAATGGTGGTCCTTCTGGCTGTTTCTTTCATCAGGGTGAAGTAATACCCTTTTGA 900 0.4056 MRRFITSELSFRYAVVTGANKGIGFGMCKKLASSGIVVVLTARDEKNGFKAVEKLKEFGLSDLLVFHQLDVDDPASVSALADFIKTEFGKLDILVNNAAVTGGKLLDADAFLRKRNGEQIDWNEVGYETYELAEQCVETNFYGVKRVTEALLPLLQLSTSPRIVNISSRAGLFKNIPNEWARTMLSDIENLTREKIDGVLEEFQKDFKEGSLEIKGWPAFASAYTMSKAALNAYTRIMAKKYPRFHINSVCPGFVKTDMNNNTGQLSIDEGAETPVLLALLPNGGPSGCFFHQGEVIPF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2163 299 Pfam short chain dehydrogenase 13 174 IPR002347 -
Gso9g2163 299 CDD carb_red_PTCR-like_SDR_c 12 299 IPR045313 GO:0016616
Gso9g2163 299 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 10 299 - -
Gso9g2163 299 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 211 239 IPR020904 GO:0016491
Gso9g2163 299 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Gso9g2163 299 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Gso9g2163 299 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Gso9g2163 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Gso9g2163 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Gso9g2163 299 Pfam Enoyl-(Acyl carrier protein) reductase 215 264 - -
Gso9g2163 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 10 299 - -
Gso9g2163 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 284 IPR036291 -
Gso9g2163 299 Gene3D - 3 299 - -
Gso9g2163 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Gso9g2163 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Gso9g2163 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2163 Gso-Chr9 45902957 45907255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2163 15 265 Acyl Lipid Metabolism Gene Families AT1G24360 24.409 7.82e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2163 K15095 - gmx:100789626 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1992 18 52515495 52518668 Gso9g2163 9 45902957 45907255 GST
Gso7g0647 7 6891267 6893986 Gso9g2163 9 45902957 45907255 PCT
Gso3g0118 3 1413741 1418068 Gso9g2163 9 45902957 45907255 PCT