Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0118 ATGGGAGAAGAAGCAAAAAGGTATGCAGTAGTGACAGGAGCTAACAAGGGAATTGGCTATGGGATATGCAAGAAATTGGCTTTGAATGGAGTTGTGGTAGTGCTAACAGCTAGAAATGAGAAAAGGGGTTTGGATGCGGTGGAAAGATTGAAAGAGTTTGGTCTTTCAGACCTTCTAGTTTTTCATCAACTTGATGTCACTGACCCTCCCAGTGTTGCTTCTTTGACACAGTTCATCAAAACCCGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTCCCCGGAGGAATAGTAAATGGGGAGAATGTTCTTAGAAGAAAAAGGGGTGAAATATCAGATTGGAATATAATAGTGCGTCAAAATTATGAGTTGGCCGAAGAATGTGTTGAAGTTAATTTCTTTGGTGCAGAAAGAGTAACTGAAGCTCTTCTTCCACTGCTTCAACTGTCCACTTCACCCAGGATTGTCAATGTATCATCTAGAATAGGAGTATTGAAGAATATACCAAATGAGTGGGCAAGAGGAGTGTTTGGTGACATTGAAAAGCTCACAAACAAAAAGCTTCATGTGGTGCTTAGGGAGTTTCTTAAAGATTACAAAGAAGGATCATTGGAATCCAAGAACTGGCCACCTGTTCTTTCAGGTTACACCATGTCAAAAACAGCCTTAAATTCCTACACAAGGATGCTGGCTAAGAAGTTCCCTCGTTTTCGCATAAATTGCTTGTGCCCTGACTTTGTCAAAACAGATATAAACCATAATGTTGGCTTTTTAACCATTGATGAAGGTGCTGAGTGTCCTGCCAGGCTTGCATTGTTGCCAGATAATGGTCCTTCTGGTCTCTTTTTCTTAAGGGAGGAAGTACTTTCTTTTGTTTGA 885 0.4079 MGEEAKRYAVVTGANKGIGYGICKKLALNGVVVVLTARNEKRGLDAVERLKEFGLSDLLVFHQLDVTDPPSVASLTQFIKTRFGRLDILVNNAGVPGGIVNGENVLRRKRGEISDWNIIVRQNYELAEECVEVNFFGAERVTEALLPLLQLSTSPRIVNVSSRIGVLKNIPNEWARGVFGDIEKLTNKKLHVVLREFLKDYKEGSLESKNWPPVLSGYTMSKTALNSYTRMLAKKFPRFRINCLCPDFVKTDINHNVGFLTIDEGAECPARLALLPDNGPSGLFFLREEVLSFV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0118 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Gso3g0118 294 Gene3D - 3 293 - -
Gso3g0118 294 Pfam short chain dehydrogenase 8 168 IPR002347 -
Gso3g0118 294 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Gso3g0118 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 293 - -
Gso3g0118 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Gso3g0118 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Gso3g0118 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Gso3g0118 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Gso3g0118 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Gso3g0118 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 276 IPR036291 -
Gso3g0118 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Gso3g0118 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Gso3g0118 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Gso3g0118 294 PANTHER OXIDOREDUCTASE-RELATED 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0118 Gso-Chr3 1413741 1418068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0118 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 22.222 5.55e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0118 K15095 - gmx:100802560 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0647 7 6891267 6893986 Gso3g0118 3 1413741 1418068 GST
Gso3g0118 3 1413741 1418068 Gso18g1992 18 52515495 52518668 PCT
Gso3g0118 3 1413741 1418068 Gso9g2163 9 45902957 45907255 PCT