Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1992 ATGGCATCAGCAACAATAAGGAATGCAGTTGTCACGGGAGCAAACAAAGGGATAGGATTTGGAATATGCAAGCAATTGGTTTCTAATGGCATCACAGTGGTGCTAACAGCAAGGGATGAGAAAAGGGGTCTTGAAGCTGTTGAAAAGCTGAAAGAGTTTGGTGTGTCTGATCAAGTGGTGTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAAAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATTCATGGAGCATATGTTGACCGTGATGCTTTAGCTGCTGCTGGGGAAAAAGTTGCCAATGTTGATTGGAGAAAAATCTCAACTGAAAATTTTGAAGCTGCCGAAGCAGGCATTAGAACAAATTACTATGGAGTCAAATTAATGTGTGAAGCACTTATTCCCCTTCTAGAATTGTCAGGCACACCAAGGATTGTCAATGTTTCCTCCTCCATGGGGAAGTTGGAGAAAATACCAAATGCATGGGCTAGAGGAGCCCTAAGTGATGCTGAGAGCCTAACAGAAGAAAAGGTGGATGAGGTTTTGAATCAGTTTCTAAAAGATTTTAAAGAGGGTTCATTAGAAACCAAAGGGTGGCCACATGCTTTTTCTGCATATATAGTCTCAAAAGCTGCTTTGACTGCCTACACAAGGATTCTTGCTAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGCTTTGTGAAAACAGATCTCAACTACAATACTGGCTATCTTAGTGTTGATGAAGGTGCTGAAAGTGTTGTAAGGTTGGCTCTGCTACCTAATGGAGGTCCTTCTGGTCTATTCTTTTCTCGAAGTGAAGTGGCATCATTCTGA 885 0.4158 MASATIRNAVVTGANKGIGFGICKQLVSNGITVVLTARDEKRGLEAVEKLKEFGVSDQVVFHQLDVTDPKSIESLANFIKTQFGKLDILVNNAGIHGAYVDRDALAAAGEKVANVDWRKISTENFEAAEAGIRTNYYGVKLMCEALIPLLELSGTPRIVNVSSSMGKLEKIPNAWARGALSDAESLTEEKVDEVLNQFLKDFKEGSLETKGWPHAFSAYIVSKAALTAYTRILAKKYPSFCINAVCPGFVKTDLNYNTGYLSVDEGAESVVRLALLPNGGPSGLFFSRSEVASF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1992 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Gso18g1992 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Gso18g1992 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Gso18g1992 294 Pfam short chain dehydrogenase 8 168 IPR002347 -
Gso18g1992 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Gso18g1992 294 CDD carb_red_PTCR-like_SDR_c 7 291 IPR045313 GO:0016616
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Gso18g1992 294 PRINTS Glucose/ribitol dehydrogenase family signature 281 294 IPR002347 -
Gso18g1992 294 Gene3D - 3 294 - -
Gso18g1992 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 294 - -
Gso18g1992 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1992 Gso-Chr18 52515495 52518668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1992 10 259 Acyl Lipid Metabolism Gene Families AT1G24360 22.925 1.03e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1992 K15095 - gmx:106797124 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1992 18 52515495 52518668 Gso9g2163 9 45902957 45907255 GST
Gso7g0647 7 6891267 6893986 Gso18g1992 18 52515495 52518668 PCT
Gso3g0118 3 1413741 1418068 Gso18g1992 18 52515495 52518668 PCT