Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1184 ATGGGGAATTCATTTGGGTGTTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTCGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCGAGAAATTATTGTGGGCAGACCGCTTTGATGCAAGCTTGTAGATATGGACATTGGGAAGTTGTACAGACCCTTCTGCTCTTCAAATGCAATGTTATGAAAGCAGATTATCTCAGCGGGAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTTGTGGCGGATTTTGTTCCAAGTGCTCCGTTTGAAGCATTACATGCTCACATGGTTGCTGAGGGTGATGCATCAAATGTGAAAAACAAATATGAACAAAGTGCGCTGTCCAAGTTTATAAACAAAACAGCTGATGCTGGTATCACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGGTGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGAATGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTATCCCTTCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGACTGCAATCAACTACAACCTCCTCTAACGAAGTTGATGCTTGTGCTGTCTGCCTGGAGAGACAATGTTCTGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAACGGGTGGGCCTCCTGGTTCTATCCCTTGTCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAATTATCAGGTTCCAAAGCAAAAGAAAATAAATTACATGTGTCCCTCAGCTTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCGACCGTCTCTTTCTCTTACCCCCGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCGTCGGAGATGCTTTGCCCCGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAATGATGGTCCTTGTCCATCATTTGAACCCCGGGAAGCAGAAGCACAAGATGGATCACCTCGCCACTCACAAGCTGCGATGATGGATCAGAATAAAATGGATGGTCCGAGGCTGGAGAAAATGACATGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1536 0.4564 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFKCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFEALHAHMVAEGDASNVKNKYEQSALSKFINKTADAGITALHMAALNGYFDCVQLLLDLSANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEVDACAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETGGPPGSIPCPLCRHGIVSFVKLSGSKAKENKLHVSLSLCTPCMLHPRDLDRPSLSLTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAEAQDGSPRHSQAAMMDQNKMDGPRLEKMTCSGMFWGRRSCSREHQCNSEINA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1184 511 Pfam Ankyrin repeats (many copies) 219 260 IPR002110 GO:0005515
Gso9g1184 511 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Gso9g1184 511 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Gso9g1184 511 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Gso9g1184 511 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Gso9g1184 511 SUPERFAMILY RING/U-box 311 373 - -
Gso9g1184 511 Pfam Ankyrin repeats (3 copies) 112 204 IPR002110 GO:0005515
Gso9g1184 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 511 - -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Gso9g1184 511 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Gso9g1184 511 SMART ANK_2a 111 142 IPR002110 GO:0005515
Gso9g1184 511 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gso9g1184 511 SMART ANK_2a 219 248 IPR002110 GO:0005515
Gso9g1184 511 SMART ANK_2a 176 205 IPR002110 GO:0005515
Gso9g1184 511 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gso9g1184 511 MobiDBLite consensus disorder prediction 457 476 - -
Gso9g1184 511 Gene3D - 7 137 IPR036770 -
Gso9g1184 511 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Gso9g1184 511 Gene3D - 141 269 IPR036770 -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Gso9g1184 511 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Gso9g1184 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 391 IPR013083 -
Gso9g1184 511 PANTHER HOMEOBOX PROTEIN WARIAI 1 511 - -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Gso9g1184 511 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Gso9g1184 511 ProSiteProfiles Zinc finger RING-type profile. 318 368 IPR001841 -
Gso9g1184 511 SMART ring_2 318 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1184 Gso-Chr9 34064041 34071355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1184 17 272 Miscellaneous Gene Families AT5G02620 27.586 5.99e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1184 K19044 - gmx:100784143 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1573 16 36263405 36271652 Gso9g1184 9 34064041 34071355 GST
Gso9g1184 9 34064041 34071355 Gso20g1255 20 42623965 42628936 PCT
Gso9g1184 9 34064041 34071355 Gso10g2122 10 48216293 48221143 PCT
Gso20g1255 20 42623965 42628936 Gso9g1184 9 34064041 34071355 PCT
Gso10g2122 10 48216293 48221143 Gso9g1184 9 34064041 34071355 PCT